Gene: CRU_005G19260 (Capsella rubella)

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Gene Identifier
CRU_005G19260
Transcript Identifier
CRU_005G19260.1
Gene Type
Coding gene
Location
scaffold_5 : 10118592-10121526 : negative

Family

Gene family
HOM03D001112
(138 genes in 31 species)
specific family
Subfamily
ORTHO03D009613
(27 genes in 25 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
sigma factor RpoD
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameCarubv10016920m.g
idPAC:20887517

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006352IEAGenome ProjectDNA-dependent transcription, initiation
GO:0006355IEAGenome Projectregulation of transcription, DNA-dependent
GO:2001141ISOPLAZA Integrative Orthologyregulation of RNA biosynthetic processAT3G53920
GO:0071482ISOPLAZA Integrative Orthologycellular response to light stimulusAT3G53920

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAGenome ProjectDNA binding
GO:0003700IEAGenome Projectsequence-specific DNA binding transcription factor activity
GO:0016987IEAGenome Projectsigma factor activity
GO:0003899ISOPLAZA Integrative OrthologyDNA-directed RNA polymerase activityAT3G53920
GO:0001053ISOPLAZA Integrative Orthologyplastid sigma factor activityAT3G53920
GO:0000988IEAPLAZA Homologyprotein binding transcription factor activityHOM03D001112
GO:0000990IEAPLAZA Homologycore RNA polymerase binding transcription factor activityHOM03D001112
GO:0000996IEAPLAZA Homologycore DNA-dependent RNA polymerase binding promoter specificity activityHOM03D001112

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT3G53920

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011991Winged helix-turn-helix DNA-binding domain
IPR013324RNA polymerase sigma factor, region 3/4
IPR000943RNA polymerase sigma-70
IPR007627RNA polymerase sigma-70 region 2
IPR007630RNA polymerase sigma-70 region 4
IPR007624RNA polymerase sigma-70 region 3
IPR013325RNA polymerase sigma factor, region 2
IPR014284RNA polymerase sigma-70 like domain

Mapman id Description
27.2RNA.transcription
No SignalP domains detected for this gene.