Anchorpoints

Gene id
CL02G03090
Organism
Citrullus lanatus

Paralogs (intra-species colinear regions)

No paralogous anchorpoints available


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL7G00030No description available.scaffold_7-View

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G38130histone deacetylase 1 Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation. histone deacetylase 1 (HD1); CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 8765 Blast hits to 8554 proteins in 1452 species: Archae - 219; Bacteria - 3185; Metazoa - 1529; Fungi - 558; Plants - 480; Viruses - 0; Other Eukaryotes - 2794 (source: NCBI BLink).4-View

Cucumis melo

Gene id Description Chromosome Strand Multiplicon
CM00066G00470No description available.CM3.5_scaffold00066+View
CM00020G00190No description available.CM3.5_scaffold00020-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_007G00020No description available.scaffold_7-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00023G02310No description available.scaffold00023-View

Eucalyptus grandis

Gene id Description Chromosome Strand Multiplicon
EG0009G12820No description available.scaffold_9+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV2G12810Histone deacetylase 19 (HD) (similar to)LG2+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR05G21500No description available.Chr05-View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD10G010510No description available.10+View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_008G20070No description available.scaffold_8+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT04G20980No description available.Chr04+View
PT09G17070No description available.Chr09+View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0002G14410No description available.scaffold_2+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP7G37620similar to AT4G38130|HD1 (HISTONE DEACETYLASE 1)ch7-6+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV03G03060name=GSVIVG01023839001;chr3+View


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Gene id
Species
Description
Chromosome
Strand