PLAZA 3.0 Dicots gene overview : AT4G38130

Gene: AT4G38130 (Arabidopsis thaliana)

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Curated Summary: Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.

Identifier	Name
alias	ATHD1
alias	RPD3A
alias	HISTONE DEACETYLASE 19
alias	ARABIDOPSIS HISTONE DEACETYLASE 19
alias	ATHDA19
alias	HDA1
alias	HD1
alias	histone deacetylase 1
alias	HDA19
alias	ARABIDOPSIS HISTONE DEACETYLASE 1
uniprot	O22446

GO term	Evidence(s)	Provider	Description	Source
GO:0016575	ISS, IEA	Gene Ontology	histone deacetylation	1
GO:2000026	IMP	UniProt	regulation of multicellular organismal development	1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0009861	IMP	UniProt	jasmonic acid and ethylene-dependent systemic resistance	1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0045892	IDA, IMP,	UniProt	negative regulation of transcription, DNA-dependent	1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0016573	IDA	UniProt	histone acetylation	1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0009294	IMP	UniProt	DNA mediated transformation	1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0009405	IMP	UniProt	pathogenesis	1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0070932	IEA	UniProt	histone H3 deacetylation	1 2 3 4 5 6 7 8 9 10 11 12
GO:0070933	IEA	UniProt	histone H4 deacetylation	1 2 3 4 5 6 7 8 9 10 11 12
GO:0006351	IEA	UniProt	transcription, DNA-templated	1 2 3 4 5 6 7 8 9 10 11 12
GO:0051276	IEA	PLAZA Homology	chromosome organization	HOM03D000868
GO:0006325	IEA	PLAZA Homology	chromatin organization	HOM03D000868
GO:0006476	IEA	PLAZA Homology	protein deacetylation	HOM03D000868
GO:0035601	IEA	PLAZA Homology	protein deacylation	HOM03D000868
GO:0016570	IEA	PLAZA Homology	histone modification	HOM03D000868
GO:0016569	IEA	PLAZA Homology	covalent chromatin modification	HOM03D000868
GO:0016568	IEA	PLAZA Homology	chromatin modification	HOM03D000868

GO term	Evidence(s)	Provider	Description	Source
GO:0004407	IDA, IMP, ISSIEA,	UniProt	histone deacetylase activity	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0005515	IPI	Gene Ontology	protein binding	1
GO:0032041	IEA	UniProt	NAD-dependent histone deacetylase activity (H3-K14 specific)	1 2 3 4 5 6 7 8 9 10 11 12
GO:0097372	IEA	UniProt	NAD-dependent histone deacetylase activity (H3-K18 specific)	1 2 3 4 5 6 7 8 9 10 11 12
GO:0046969	IEA	UniProt	NAD-dependent histone deacetylase activity (H3-K9 specific)	1 2 3 4 5 6 7 8 9 10 11 12
GO:0046970	IEA	UniProt	NAD-dependent histone deacetylase activity (H4-K16 specific)	1 2 3 4 5 6 7 8 9 10 11 12
GO:0016810	IEA	PLAZA Homology	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	HOM03D000868
GO:0016811	IEA	PLAZA Homology	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	HOM03D000868
GO:0019213	IEA	PLAZA Homology	deacetylase activity	HOM03D000868
GO:0033558	IEA	PLAZA Homology	protein deacetylase activity	HOM03D000868

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	IDA, ISMISS,	UniProt	nucleus	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR003084	Histone deacetylase
IPR023801	Histone deacetylase domain
IPR000286	Histone deacetylase superfamily

Mapman id	Description
27.3.55	RNA.regulation of transcription.HDA

No SignalP domains detected for this gene.