Gene: AT4G38130 (Arabidopsis thaliana)

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Gene Identifier
AT4G38130
Transcript Identifier
AT4G38130.1
Gene Type
Coding gene
Location
4 : 17896493-17899057 : negative

Family

Gene family
HOM03D000868
(165 genes in 31 species)
specific family
Subfamily
ORTHO03D000474
(84 genes in 30 species)
specific family

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Descriptions

Description
histone deacetylase 1
Curated Summary
Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.
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Identifiers

Identifier Name
aliasATHD1
aliasRPD3A
aliasHISTONE DEACETYLASE 19
aliasARABIDOPSIS HISTONE DEACETYLASE 19
aliasATHDA19
aliasHDA1
aliasHD1
aliashistone deacetylase 1
aliasHDA19
aliasARABIDOPSIS HISTONE DEACETYLASE 1
uniprotO22446

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016575ISS, IEAGene Ontologyhistone deacetylation1
GO:2000026IMPUniProtregulation of multicellular organismal development1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0009861IMPUniProtjasmonic acid and ethylene-dependent systemic resistance1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0045892IDA, IMP, UniProtnegative regulation of transcription, DNA-dependent1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0016573IDAUniProthistone acetylation1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0009294IMPUniProtDNA mediated transformation1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0009405IMPUniProtpathogenesis1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0070932IEAUniProthistone H3 deacetylation1 2 3 4 5 6 7 8 9 10 11 12
GO:0070933IEAUniProthistone H4 deacetylation1 2 3 4 5 6 7 8 9 10 11 12
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6 7 8 9 10 11 12
GO:0051276IEAPLAZA Homologychromosome organizationHOM03D000868
GO:0006325IEAPLAZA Homologychromatin organizationHOM03D000868
GO:0006476IEAPLAZA Homologyprotein deacetylationHOM03D000868
GO:0035601IEAPLAZA Homologyprotein deacylationHOM03D000868
GO:0016570IEAPLAZA Homologyhistone modificationHOM03D000868
GO:0016569IEAPLAZA Homologycovalent chromatin modificationHOM03D000868
GO:0016568IEAPLAZA Homologychromatin modificationHOM03D000868

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004407IDA, IMP, ISSIEA, UniProthistone deacetylase activity1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0005515IPIGene Ontologyprotein binding1
GO:0032041IEAUniProtNAD-dependent histone deacetylase activity (H3-K14 specific)1 2 3 4 5 6 7 8 9 10 11 12
GO:0097372IEAUniProtNAD-dependent histone deacetylase activity (H3-K18 specific)1 2 3 4 5 6 7 8 9 10 11 12
GO:0046969IEAUniProtNAD-dependent histone deacetylase activity (H3-K9 specific)1 2 3 4 5 6 7 8 9 10 11 12
GO:0046970IEAUniProtNAD-dependent histone deacetylase activity (H4-K16 specific)1 2 3 4 5 6 7 8 9 10 11 12
GO:0016810IEAPLAZA Homologyhydrolase activity, acting on carbon-nitrogen (but not peptide) bondsHOM03D000868
GO:0016811IEAPLAZA Homologyhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidesHOM03D000868
GO:0019213IEAPLAZA Homologydeacetylase activityHOM03D000868
GO:0033558IEAPLAZA Homologyprotein deacetylase activityHOM03D000868

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMISS, UniProtnucleus1 2 3 4 5 6 7 8 9 10 11 12 13 14 15

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003084Histone deacetylase
IPR023801Histone deacetylase domain
IPR000286Histone deacetylase superfamily

Mapman id Description
27.3.55RNA.regulation of transcription.HDA
No SignalP domains detected for this gene.