Anchorpoints

Gene id
AT5G17520
Organism
Arabidopsis thaliana

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AT1G64860sigma factor A (SIGA); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1); Has 23164 Blast hits to 23156 proteins in 2779 species: Archae - 0; Bacteria - 16620; Metazoa - 0; Fungi - 0; Plants - 234; Viruses - 18; Other Eukaryotes - 6292 (source: NCBI BLink). sigma factor A Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme1+View


Orthologs (inter-species colinear regions)

Arabidopsis lyrata

Gene id Description Chromosome Strand Multiplicon
AL2G08710No description available.scaffold_2+View
AL6G17410No description available.scaffold_6-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR02G08490No description available.A02-View
BR08G05670No description available.A08-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00043G01400No description available.supercontig_43-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_002G09140No description available.scaffold_2+View
CRU_006G15370No description available.scaffold_6-View

Citrus sinensis

Gene id Description Chromosome Strand Multiplicon
CS00284G00180No description available.scaffold00284+View

Glycine max

Gene id Description Chromosome Strand Multiplicon
GM09G35741No description available.Gm09-View
GM12G01600No description available.Gm12+View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR07G24690No description available.Chr07-View
GR04G25500No description available.Chr04+View

Malus domestica

Gene id Description Chromosome Strand Multiplicon
MD01G023530No description available.1+View

Manihot esculenta

Gene id Description Chromosome Strand Multiplicon
ME03614G01320No description available.scaffold03614-View
ME11297G00750No description available.scaffold11297-View

Prunus persica

Gene id Description Chromosome Strand Multiplicon
PPE_002G31560No description available.scaffold_2+View

Populus trichocarpa

Gene id Description Chromosome Strand Multiplicon
PT19G04330No description available.Chr19-View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30148G00650No description available.30148+View

Solanum lycopersicum

Gene id Description Chromosome Strand Multiplicon
SL03G097320RNA polymerase sigma-70 factor (AHRD V1 ***- B0C890_ACAM1)%3B contains Interpro domain(s) IPR013325 RNA polymerase sigma factor%2C region 2ch03-View

Solanum tuberosum

Gene id Description Chromosome Strand Multiplicon
ST03G018020RNA polymerase sigma factor (AHRD V1 ***- A5GQ42_SYNR3); contains Interpro domain(s) IPR013325 RNA polymerase sigma factor, region 2chr03-View

Theobroma cacao

Gene id Description Chromosome Strand Multiplicon
TC0005G22740No description available.scaffold_5-View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP6G26700similar to AT5G17520|RCP1 (ROOT CAP 1)ch6-6+View

Vitis vinifera

Gene id Description Chromosome Strand Multiplicon
VV16G04820name=GSVIVG01024261001;chr16+View


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Gene id
Species
Description
Chromosome
Strand