Anchorpoints
- Gene id
- AT5G17520
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AT1G64860 | sigma factor A (SIGA); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1); Has 23164 Blast hits to 23156 proteins in 2779 species: Archae - 0; Bacteria - 16620; Metazoa - 0; Fungi - 0; Plants - 234; Viruses - 18; Other Eukaryotes - 6292 (source: NCBI BLink). sigma factor A Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme | 1 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
AL2G08710 | No description available. | scaffold_2 | + | View |
AL6G17410 | No description available. | scaffold_6 | - | View |
Brassica rapa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
BR02G08490 | No description available. | A02 | - | View |
BR08G05670 | No description available. | A08 | - | View |
Carica papaya
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CP00043G01400 | No description available. | supercontig_43 | - | View |
Capsella rubella
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CRU_002G09140 | No description available. | scaffold_2 | + | View |
CRU_006G15370 | No description available. | scaffold_6 | - | View |
Citrus sinensis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
CS00284G00180 | No description available. | scaffold00284 | + | View |
Glycine max
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GM09G35741 | No description available. | Gm09 | - | View |
GM12G01600 | No description available. | Gm12 | + | View |
Gossypium raimondii
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
GR07G24690 | No description available. | Chr07 | - | View |
GR04G25500 | No description available. | Chr04 | + | View |
Malus domestica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
MD01G023530 | No description available. | 1 | + | View |
Manihot esculenta
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ME03614G01320 | No description available. | scaffold03614 | - | View |
ME11297G00750 | No description available. | scaffold11297 | - | View |
Prunus persica
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PPE_002G31560 | No description available. | scaffold_2 | + | View |
Populus trichocarpa
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
PT19G04330 | No description available. | Chr19 | - | View |
Ricinus communis
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
RC30148G00650 | No description available. | 30148 | + | View |
Solanum lycopersicum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
SL03G097320 | RNA polymerase sigma-70 factor (AHRD V1 ***- B0C890_ACAM1)%3B contains Interpro domain(s) IPR013325 RNA polymerase sigma factor%2C region 2 | ch03 | - | View |
Solanum tuberosum
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
ST03G018020 | RNA polymerase sigma factor (AHRD V1 ***- A5GQ42_SYNR3); contains Interpro domain(s) IPR013325 RNA polymerase sigma factor, region 2 | chr03 | - | View |
Theobroma cacao
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TC0005G22740 | No description available. | scaffold_5 | - | View |
Thellungiella parvula
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
TP6G26700 | similar to AT5G17520|RCP1 (ROOT CAP 1) | ch6-6 | + | View |
Vitis vinifera
Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|
VV16G04820 | name=GSVIVG01024261001; | chr16 | + | View |