Gene: ST03G018020 (Solanum tuberosum)

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Gene Identifier
ST03G018020
Transcript Identifier
ST03G018020.1
Gene Type
Coding gene
Location
chr03 : 23315362-23319540 : negative

Family

Gene family
HOM03D001904
(89 genes in 31 species)
specific family
Subfamily
ORTHO03D003539
(37 genes in 28 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

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Descriptions

Description
RNA polymerase sigma factor (AHRD V1 ***- A5GQ42_SYNR3); contains Interpro domain(s) IPR013325 RNA polymerase sigma factor, region 2
Description (AnnoMine)
sigma factor SigA

Identifiers

Identifier Name
GeneNamegene:Sotub03g018020
pidSotub03g018020.1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006352IEAInterProDNA-dependent transcription, initiation
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0080005ISOPLAZA Integrative Orthologyphotosystem stoichiometry adjustmentAT1G64860
GO:0009416ISOPLAZA Integrative Orthologyresponse to light stimulusOS08G06630
GO:0071461ISOPLAZA Integrative Orthologycellular response to redox stateAT1G64860
GO:2001141ISOPLAZA Integrative Orthologyregulation of RNA biosynthetic processAT1G64860
GO:0071482ISOPLAZA Integrative Orthologycellular response to light stimulusAT1G64860

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0016987IEAInterProsigma factor activity
GO:0003700IEAInterProsequence-specific DNA binding transcription factor activity
GO:0003677IEAInterProDNA binding
GO:0001053ISOPLAZA Integrative Orthologyplastid sigma factor activityAT1G64860
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT1G64860
GO:0000990IEAPLAZA Homologycore RNA polymerase binding transcription factor activityHOM03D001904
GO:0000996IEAPLAZA Homologycore DNA-dependent RNA polymerase binding promoter specificity activityHOM03D001904

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT1G64860

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000943RNA polymerase sigma-70
IPR014284RNA polymerase sigma-70 like domain
IPR011991Winged helix-turn-helix DNA-binding domain
IPR007630RNA polymerase sigma-70 region 4
IPR013324RNA polymerase sigma factor, region 3/4
IPR013325RNA polymerase sigma factor, region 2
IPR007627RNA polymerase sigma-70 region 2
IPR007624RNA polymerase sigma-70 region 3

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.