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WorkbenchAnchorpoints
- Gene id
- AT2G27840
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT5G22650 | Encodes a member of a plant-specific class of histone deacetylases. Controls the development of adaxial/abaxial leaf polarity. Its mRNA is widely expressed in stems, leaves, flowers and young siliques. Plant lines expressing RNAi constructs directed against this gene showed a marked reduction in agrobacterium-mediated root transformation. histone deacetylase 2B (HD2B); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: DNA mediated transformation, negative regulation of transcription, polarity specification of adaxial/abaxial axis; LOCATED IN: cytosol, nucleolus, cell wall, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: histone deacetylase 3 (TAIR:AT3G44750.1); Has 67941 Blast hits to 34482 proteins in 1815 species: Archae - 206; Bacteria - 15660; Metazoa - 22478; Fungi - 9360; Plants - 3234; Viruses - 784; Other Eukaryotes - 16219 (source: NCBI BLink). histone deacetylase 2B | 5 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AL6G22330 | No description available. | scaffold_6 | + | View |
| AL4G12270 | No description available. | scaffold_4 | - | View |
Brassica rapa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BR04G15870 | No description available. | A04 | + | View |
| BR02G11170 | No description available. | A02 | + | View |
| BR10G13580 | No description available. | A10 | - | View |
Citrullus lanatus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CL02G21930 | No description available. | Chr2 | - | View |
Cucumis melo
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CM00047G03330 | No description available. | CM3.5_scaffold00047 | + | View |
Carica papaya
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CP00047G00610 | No description available. | supercontig_47 | + | View |
Capsella rubella
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CRU_004G08400 | No description available. | scaffold_4 | + | View |
| CRU_006G19800 | No description available. | scaffold_6 | + | View |
Citrus sinensis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CS00056G00290 | No description available. | scaffold00056 | - | View |
Eucalyptus grandis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| EG0010G03710 | No description available. | scaffold_10 | - | View |
Fragaria vesca
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| FV6G19240 | Histone deacetylase HDT1 (HD2a) (probable) | LG6 | + | View |
Glycine max
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GM11G19480 | No description available. | Gm11 | + | View |
| GM03G34850 | No description available. | Gm03 | - | View |
| GM19G37540 | No description available. | Gm19 | - | View |
| GM12G09000 | Histone deacetylase HDT1 | Gm12 | - | View |
| GM12G30600 | No description available. | Gm12 | - | View |
Gossypium raimondii
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GR09G08860 | No description available. | Chr09 | - | View |
| GR06G10930 | No description available. | Chr06 | - | View |
Lotus japonicus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| LJ3G043080 | No description available. | chr3 | + | View |
Manihot esculenta
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ME05859G00250 | No description available. | scaffold05859 | - | View |
| ME03569G00050 | No description available. | scaffold03569 | - | View |
Medicago truncatula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MT4G055440 | histone deacetylase HDT2 C putative | chr4 | + | View |
| MT2G084815 | histone deacetylase 2a C putative | chr2 | + | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT09G14940 | No description available. | Chr09 | + | View |
Solanum lycopersicum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SL11G066840 | Histone deacetylase-like protein (AHRD V1 *-*- Q3HVL4_SOLTU) | ch11 | - | View |
Solanum tuberosum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ST11G024650 | Histone deacetylase-like protein-like (AHRD V1 ***- Q2XTD2_SOLTU) | chr11 | - | View |
Theobroma cacao
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TC0005G07730 | No description available. | scaffold_5 | - | View |
Thellungiella parvula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TP6G22690 | similar to AT5G22650|HD2B (HISTONE DEACETYLASE 2B) | ch6-6 | - | View |
| TP4G10680 | similar to AT2G27840|HDT4 | ch4-6 | + | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV06G08370 | name=GSVIVG01031404001; | chr6 | - | View |