Gene: AT2G27840 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G27840
Transcript Identifier
AT2G27840.1
Gene Type
Coding gene
Location
2 : 11862085-11863707 : positive

Family

Gene family
HOM03D001459
(109 genes in 30 species)
specific family
Subfamily
ORTHO03D027675
(5 genes in 5 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
histone deacetylase-related / HD-related
Curated Summary
Belongs to the plant specific HD2 type proteins; similar to nucleolar Zea mays histone deacetylase; HD2-p39
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Identifiers

Identifier Name
aliasHDA13
aliasHDT04
aliasHD2D
aliashistone deacetylase 2D
aliasHISTONE DEACETYLASE 13
aliasHDT4
uniprotQ9M4T3

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0030422IGIUniProtproduction of siRNA involved in RNA interference1 2 3 4 5 6 7
GO:0001510RCAGene OntologyRNA methylation1
GO:0009165RCAGene Ontologynucleotide biosynthetic process1
GO:0010162IEPUniProtseed dormancy process1 2 3 4 5 6 7
GO:0016568IEAUniProtchromatin modification1 2 3 4 5 6
GO:0006355IEAUniProtregulation of transcription, DNA-dependent1 2 3 4 5 6
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004407ISSGene Ontologyhistone deacetylase activity1
GO:0016787IEAUniProthydrolase activity1 2 3 4 5 6
GO:0046872IEAPLAZA Homologymetal ion bindingHOM03D001459

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISMGene Ontologynucleus1
GO:0005730IDAUniProtnucleolus1 2 3 4 5 6 7

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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No InterPro domains detected for this gene.
Mapman id Description
27.3.55RNA.regulation of transcription.HDA
No SignalP domains detected for this gene.