Gene: AT5G22650 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G22650
Transcript Identifier
AT5G22650.1
Gene Type
Coding gene
Location
5 : 7534120-7536054 : positive

Family

Gene family
HOM03D001459
(109 genes in 30 species)
specific family
Subfamily
ORTHO03D026555
(5 genes in 5 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
histone deacetylase 2B
Curated Summary
Encodes a member of a plant-specific class of histone deacetylases. Controls the development of adaxial/abaxial leaf polarity. Its mRNA is widely expressed in stems, leaves, flowers and young siliques. Plant lines expressing RNAi constructs directed against this gene showed a marked reduction in agrobacterium-mediated root transformation.
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Identifiers

Identifier Name
aliasHDA4
aliasHDT2
aliasHDT02
aliasHD2B
aliasATHD2B
aliasARABIDOPSIS HISTONE DEACETYLASE 2
aliasHISTONE DEACETYLASE 2
aliashistone deacetylase 2B
aliasATHD2
aliasHD2
uniprotQ56WH4

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0045892IDAUniProtnegative regulation of transcription, DNA-dependent1 2 3 4 5 6 7 8 9 10
GO:0009944IMPUniProtpolarity specification of adaxial/abaxial axis1 2 3 4 5 6 7 8 9 10
GO:0009294IMPUniProtDNA mediated transformation1 2 3 4 5 6 7 8 9 10
GO:0001510RCAGene OntologyRNA methylation1
GO:0006355RCAGene Ontologyregulation of transcription, DNA-dependent1
GO:0009220RCAGene Ontologypyrimidine ribonucleotide biosynthetic process1
GO:0009909RCAGene Ontologyregulation of flower development1
GO:0043687RCAGene Ontologypost-translational protein modification1
GO:0045893RCAGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0010162IEPUniProtseed dormancy process1 2 3 4 5 6 7 8 9 10
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6 7 8 9

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004407ISSUniProthistone deacetylase activity1 2 3 4 5 6 7 8 9 10
GO:0046872IEAPLAZA Homologymetal ion bindingHOM03D001459

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISMGene Ontologynucleus1
GO:0005730IDA, TAS, UniProtnucleolus1 2 3 4 5 6 7 8 9 10 11
GO:0005618IDAUniProtcell wall1 2 3 4 5 6 7 8 9 10
GO:0005774IDAUniProtvacuolar membrane1 2 3 4 5 6 7 8 9 10
GO:0005829IDAUniProtcytosol1 2 3 4 5 6 7 8 9 10
GO:0005739IDAUniProtmitochondrion1 2 3 4 5 6 7 8 9 10

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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No InterPro domains detected for this gene.
Mapman id Description
27.3.55RNA.regulation of transcription.HDA
No SignalP domains detected for this gene.