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- Gene id
- AT1G06430
- Organism
- Arabidopsis thaliana
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT2G30950 | Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity. In plsp1-1 mutant plastids, the nonmature form of the protein localizes in the membrane. VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597; Bacteria - 18199; Metazoa - 4991; Fungi - 3835; Plants - 3350; Viruses - 34; Other Eukaryotes - 10818 (source: NCBI BLink). FtsH extracellular protease family | 2 | + | View |
Orthologs (inter-species colinear regions)
Arabidopsis lyrata
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AL4G15710 | No description available. | scaffold_4 | + | View |
Brassica rapa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BR05G13020 | No description available. | A05 | - | View |
| BR03G15660 | No description available. | A03 | - | View |
| BR10G01520 | No description available. | A10 | + | View |
| BR08G30530 | No description available. | A08 | + | View |
Citrullus lanatus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CL02G18860 | No description available. | Chr2 | - | View |
Cucumis melo
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CM00003G06630 | No description available. | CM3.5_scaffold00003 | - | View |
Capsella rubella
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CRU_004G11840 | No description available. | scaffold_4 | + | View |
| CRU_001G05440 | No description available. | scaffold_1 | - | View |
Eucalyptus grandis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| EG0001G16040 | No description available. | scaffold_1 | - | View |
Gossypium raimondii
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GR05G02050 | No description available. | Chr05 | - | View |
Physcomitrella patens
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PP00013G00390 | No description available. | scaffold_13 | - | View |
Thellungiella parvula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TP1G05190 | similar to AT1G06430|FTSH8 | ch1-1 | - | View |
| TP4G13440 | similar to AT2G30950|VAR2 (VARIEGATED 2) | ch4-6 | + | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV12G03290 | name=GSVIVG01020760001; | chr12 | + | View |