Gene: AT2G30950 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G30950
Transcript Identifier
AT2G30950.1
Gene Type
Coding gene
Location
2 : 13174692-13177064 : positive

Family

Gene family
HOM03D000022
(2181 genes in 31 species)
specific family
Subfamily
ORTHO03D000967
(61 genes in 28 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
FtsH extracellular protease family
Curated Summary
Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity. In plsp1-1 mutant plastids, the nonmature form of the protein localizes in the membrane.
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Identifiers

Identifier Name
aliasVAR2
aliasVARIEGATED 2
aliasFTSH2
uniprotO80860

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010027IMP, RCA, UniProtthylakoid membrane organization1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0010205IMPUniProtphotoinhibition1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0010304TAS, RCAUniProtPSII associated light-harvesting complex II catabolic process1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0030163IDAGene Ontologyprotein catabolic process1
GO:0072593IDAUniProtreactive oxygen species metabolic process1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0006098RCAGene Ontologypentose-phosphate shunt1
GO:0006364RCAGene OntologyrRNA processing1
GO:0009902RCAGene Ontologychloroplast relocation1
GO:0010207RCAGene Ontologyphotosystem II assembly1
GO:0034660RCAGene OntologyncRNA metabolic process1
GO:0035304RCAGene Ontologyregulation of protein dephosphorylation1
GO:0042744RCAGene Ontologyhydrogen peroxide catabolic process1
GO:0042793RCAGene Ontologytranscription from plastid promoter1
GO:0045893RCAGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0010206IMPUniProtphotosystem II repair1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0006508IEAUniProtproteolysis1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0007275IEAUniProtmulticellular organismal development1 2 3 4 5 6 7 8 9 10 11 12 13

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008237ISSUniProtmetallopeptidase activity1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0008270ISSGene Ontologyzinc ion binding1
GO:0016887ISSGene OntologyATPase activity1
GO:0004176ISSUniProtATP-dependent peptidase activity1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0017111IEAInterPronucleoside-triphosphatase activity
GO:0000166IEAInterPronucleotide binding
GO:0004222IEAUniProtmetalloendopeptidase activity1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0005524IEAUniProtATP binding1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0046872IEAUniProtmetal ion binding1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0032555IEAPLAZA Homologypurine ribonucleotide bindingHOM03D000022
GO:0016817IEAPLAZA Homologyhydrolase activity, acting on acid anhydridesHOM03D000022
GO:0032553IEAPLAZA Homologyribonucleotide bindingHOM03D000022
GO:0043168IEAPLAZA Homologyanion bindingHOM03D000022
GO:0043167IEAPLAZA Homologyion bindingHOM03D000022
GO:0035639IEAPLAZA Homologypurine ribonucleoside triphosphate bindingHOM03D000022
GO:0097367IEAPLAZA Homologycarbohydrate derivative bindingHOM03D000022
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000022
GO:0016818IEAPLAZA Homologyhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesHOM03D000022
GO:0032559IEAPLAZA Homologyadenyl ribonucleotide bindingHOM03D000022
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D000022
GO:0016462IEAPLAZA Homologypyrophosphatase activityHOM03D000022
GO:0030554IEAPLAZA Homologyadenyl nucleotide bindingHOM03D000022
GO:0001882IEAPLAZA Homologynucleoside bindingHOM03D000022
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000022
GO:0017076IEAPLAZA Homologypurine nucleotide bindingHOM03D000022
GO:0036094IEAPLAZA Homologysmall molecule bindingHOM03D000022
GO:0032549IEAPLAZA Homologyribonucleoside bindingHOM03D000022
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03D000022
GO:0005488IEAPLAZA HomologybindingHOM03D000022
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000022
GO:0001883IEAPLAZA Homologypurine nucleoside bindingHOM03D000022
GO:0032550IEAPLAZA Homologypurine ribonucleoside bindingHOM03D000022

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009535IDAUniProtchloroplast thylakoid membrane1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009507IDAGene Ontologychloroplast1
GO:0031977IDAUniProtthylakoid lumen1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009941IDAUniProtchloroplast envelope1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009579IDAGene Ontologythylakoid1
GO:0016020IDA, IEAGene Ontologymembrane1
GO:0009534IDAGene Ontologychloroplast thylakoid1
GO:0016021IEAUniProtintegral to membrane1 2 3 4 5 6 7 8 9 10 11 12 13

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003960ATPase, AAA-type, conserved site
IPR000642Peptidase M41
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR003593AAA+ ATPase domain
IPR005936Peptidase, FtsH
IPR003959ATPase, AAA-type, core

Mapman id Description
29.5.7protein.degradation.metalloprotease
No SignalP domains detected for this gene.