Anchorpoints

Gene id
AL7G17030
Organism
Arabidopsis lyrata

Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
AL8G15270No description available.scaffold_8-View


Orthologs (inter-species colinear regions)

Arabidopsis thaliana

Gene id Description Chromosome Strand Multiplicon
AT4G25090Riboflavin synthase-like superfamily protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: oxidation reduction; LOCATED IN: cytosolic ribosome, vacuole; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), Ferric reductase, NAD binding (InterPro:IPR013121), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: NADPH/respiratory burst oxidase protein D (TAIR:AT5G51060.1); Has 2591 Blast hits to 2460 proteins in 416 species: Archae - 12; Bacteria - 368; Metazoa - 707; Fungi - 773; Plants - 526; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink). Riboflavin synthase-like superfamily protein4-View
AT5G51060RHD2 (along with RHD3 and RHD4) is required for normal root hair elongation. Has NADPH oxidase activity. Gene is expressed in the elongation and differention zone in trichoblasts and elongating root hairs. RDH2 is localized to the growing tips of root hair cells. It is required for the production of reactive oxygen species in response to extracellular ATP stimulus. The increase in ROS production stimulates Ca2+ influx. NADPH/respiratory burst oxidase protein D ROOT HAIR DEFECTIVE 2 (RHD2); CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: Riboflavin synthase-like superfamily protein (TAIR:AT4G25090.1); Has 2388 Blast hits to 2271 proteins in 341 species: Archae - 10; Bacteria - 214; Metazoa - 694; Fungi - 757; Plants - 530; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink).5-View

Brassica rapa

Gene id Description Chromosome Strand Multiplicon
BR03G48270No description available.A03-View
BR03G14780No description available.A03+View
BR01G15060No description available.A01-View

Carica papaya

Gene id Description Chromosome Strand Multiplicon
CP00013G01910No description available.supercontig_13-View

Capsella rubella

Gene id Description Chromosome Strand Multiplicon
CRU_008G10860No description available.scaffold_8-View
CRU_007G15080No description available.scaffold_7+View

Fragaria vesca

Gene id Description Chromosome Strand Multiplicon
FV5G09870Respiratory burst oxidase homolog protein D (AtRBOHD) (putative)LG5-View

Gossypium raimondii

Gene id Description Chromosome Strand Multiplicon
GR01G05330No description available.Chr01+View

Ricinus communis

Gene id Description Chromosome Strand Multiplicon
RC30147G02820No description available.30147+View

Thellungiella parvula

Gene id Description Chromosome Strand Multiplicon
TP7G23080similar to AT4G25090|respiratory burst oxidase, putative / NADPH oxidase, putativech7-4-View
TP6G13240similar to AT5G51060|RHD2 (ROOT HAIR DEFECTIVE 2)ch6-6-View


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Chromosome
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