Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchAnchorpoints
- Gene id
- AL6G01440
- Organism
- Arabidopsis lyrata
Paralogs (intra-species colinear regions)
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AL4G13460 | No description available. | scaffold_4 | - | View |
| AL1G21250 | No description available. | scaffold_1 | - | View |
| AL5G25610 | No description available. | scaffold_5 | - | View |
| AL4G26190 | No description available. | scaffold_4 | - | View |
Orthologs (inter-species colinear regions)
Arabidopsis thaliana
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| AT2G39700 | expansin A4 expansin A4 (EXPA4); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A16 (TAIR:AT3G55500.1); Has 2158 Blast hits to 2155 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 41; Plants - 2085; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. | 2 | - | View |
| AT1G20190 | member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin 11 expansin 11 (EXPA11); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.4); Has 2193 Blast hits to 2189 proteins in 161 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 64; Plants - 2080; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). | 1 | - | View |
| AT3G55500 | expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A16 (EXPA16); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1); Has 2167 Blast hits to 2164 proteins in 159 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 38; Plants - 2087; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). expansin A16 | 3 | - | View |
| AT2G28950 | Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. expansin A6 (EXPA6); CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1); Has 2139 Blast hits to 2136 proteins in 145 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 24; Plants - 2081; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). expansin A6 | 2 | - | View |
| AT5G02260 | expansin A9 member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) expansin A9 (EXPA9); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: Barwin-like endoglucanases superfamily protein (TAIR:AT2G37640.1); Has 2170 Blast hits to 2166 proteins in 155 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 2091; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). | 5 | + | View |
Amborella trichopoda
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ATR_00012G01840 | No description available. | scaffold00012 | - | View |
Brassica rapa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BR10G28670 | No description available. | A10 | - | View |
| BR09G36380 | No description available. | A09 | - | View |
| BR03G00570 | No description available. | A03 | + | View |
| BR05G07640 | No description available. | A05 | + | View |
| BR06G14570 | No description available. | A06 | - | View |
| BR02G02890 | No description available. | A02 | + | View |
Beta vulgaris
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| BV7G06460 | No description available. | Bvchr7.sca021 | + | View |
| BV2G05410 | No description available. | Bvchr2.sca001 | - | View |
Citrullus lanatus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CL03G01470 | No description available. | Chr3 | + | View |
| CL02G20290 | No description available. | Chr2 | + | View |
| CL04G08020 | No description available. | Chr4 | + | View |
Cucumis melo
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CM00002G00700 | No description available. | CM3.5_scaffold00002 | - | View |
| CM00044G01630 | No description available. | CM3.5_scaffold00044 | + | View |
Carica papaya
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CP00001G04090 | No description available. | supercontig_1 | - | View |
| CP00081G01390 | No description available. | supercontig_81 | + | View |
Capsella rubella
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CRU_004G21030 | No description available. | scaffold_4 | - | View |
| CRU_005G20900 | No description available. | scaffold_5 | - | View |
| CRU_004G18970 | No description available. | scaffold_4 | - | View |
| CRU_006G01070 | No description available. | scaffold_6 | + | View |
| CRU_001G18900 | No description available. | scaffold_1 | - | View |
Citrus sinensis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| CS00002G05960 | No description available. | scaffold00002 | - | View |
| CS00014G00340 | No description available. | scaffold00014 | + | View |
| CS00189G00060 | No description available. | scaffold00189 | - | View |
Eucalyptus grandis
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| EG0002G18820 | No description available. | scaffold_2 | + | View |
| EG0001G10310 | No description available. | scaffold_1 | - | View |
| EG0010G17700 | No description available. | scaffold_10 | + | View |
Glycine max
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GM15G04240 | No description available. | Gm15 | + | View |
| GM18G39850 | No description available. | Gm18 | - | View |
| GM13G41160 | No description available. | Gm13 | - | View |
| GM07G15910 | No description available. | Gm07 | - | View |
Gossypium raimondii
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| GR12G10440 | No description available. | Chr12 | - | View |
| GR01G11110 | No description available. | Chr01 | - | View |
| GR07G37630 | No description available. | Chr07 | - | View |
| GR02G25740 | No description available. | Chr02 | + | View |
| GR06G17240 | No description available. | Chr06 | + | View |
| GR03G13100 | No description available. | Chr03 | + | View |
Lotus japonicus
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| LJ1G045450 | No description available. | chr1 | + | View |
Malus domestica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MD01G012420 | No description available. | 1 | - | View |
| MD12G013180 | No description available. | 12 | - | View |
| MD03G006640 | No description available. | 3 | + | View |
Manihot esculenta
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ME06916G00600 | No description available. | scaffold06916 | + | View |
| ME08265G02170 | No description available. | scaffold08265 | - | View |
| ME06705G00090 | No description available. | scaffold06705 | + | View |
Medicago truncatula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| MT7G061720 | expansin-A1-like protein | chr7 | - | View |
| MT2G097030 | expansin A10 | chr2 | - | View |
Oryza sativa ssp. japonica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| OS03G60720 | Expansin-A7 expansin precursor, putative, expressed | 3 | - | View |
Prunus persica
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PPE_006G07410 | No description available. | scaffold_6 | + | View |
| PPE_006G26410 | No description available. | scaffold_6 | - | View |
| PPE_002G22810 | No description available. | scaffold_2 | - | View |
Populus trichocarpa
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| PT01G24090 | No description available. | Chr01 | - | View |
| PT08G05710 | No description available. | Chr08 | - | View |
| PT09G03180 | No description available. | Chr09 | - | View |
| PT10G20250 | No description available. | Chr10 | + | View |
| PT06G08610 | No description available. | Chr06 | - | View |
Solanum lycopersicum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| SL09G010860 | Expansin (AHRD V1 ***- Q9ZP32_SOLLC)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminal | ch09 | - | View |
| SL10G086520 | Expansin-1 (AHRD V1 ***- Q6RX69_PETHY)%3B contains Interpro domain(s) IPR002963 Expansin | ch10 | - | View |
| SL10G084780 | Expansin (AHRD V1 ***- Q9ZP32_SOLLC)%3B contains Interpro domain(s) IPR007117 Pollen allergen/expansin%2C C-terminal | ch10 | - | View |
| SL06G076220 | Expansin-1 (AHRD V1 ***- Q6RX69_PETHY)%3B contains Interpro domain(s) IPR002963 Expansin | ch06 | - | View |
| SL06G005560 | Expansin-1 (AHRD V1 ***- Q6RX69_PETHY)%3B contains Interpro domain(s) IPR007112 Expansin 45%2C endoglucanase-like IPR007117 Pollen allergen/expansin%2C C-terminal | ch06 | - | View |
Solanum tuberosum
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ST10G024150 | Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR007117 Pollen allergen/expansin, C-terminal | chr10 | + | View |
| ST10G028230 | Expansin (AHRD V1 ***- Q9ZP32_SOLLC); contains Interpro domain(s) IPR002963 Expansin | chr10 | + | View |
| ST06G032040 | Expansin-1 (AHRD V1 ***- Q6RX69_PETHY); contains Interpro domain(s) IPR002963 Expansin | chr06 | - | View |
Theobroma cacao
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TC0005G03690 | No description available. | scaffold_5 | + | View |
| TC0009G31460 | No description available. | scaffold_9 | + | View |
Thellungiella parvula
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| TP5G06980 | similar to AT3G55500|ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) | ch5-1 | + | View |
| TP4G20000 | similar to AT2G37640|EXP3 | ch4-6 | - | View |
| TP4G21950 | similar to AT2G39700|ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) | ch4-6 | - | View |
| TP4G11760 | similar to AT2G28950|ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) | ch4-6 | - | View |
| TP6G40190 | similar to AT5G02260|ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9) | ch6-6 | - | View |
| TP1G17960 | similar to AT1G20190|ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) | ch1-1 | - | View |
Vitis vinifera
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| VV08G14490 | name=GSVIVG01034162001; | chr8 | - | View |
| VV06G03450 | name=GSVIVG01024946001; | chr6 | - | View |
Zea mays
| Gene id | Description | Chromosome | Strand | Multiplicon |
|---|---|---|---|---|
| ZM05G01430 | alpha-expansin 6 | 5 | + | View |