Gene: AT2G39700 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G39700
Transcript Identifier
AT2G39700.1
Gene Type
Coding gene
Location
2 : 16544246-16545434 : negative

Family

Gene family
HOM03D000073
(1206 genes in 30 species)
specific family
Subfamily
ORTHO03D016686
(10 genes in 9 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
expansin A4
Curated Summary
putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
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Identifiers

Identifier Name
aliasATEXP4
aliasATEXPA4
aliasexpansin A4
aliasATHEXP ALPHA 1.6
aliasEXPA4
uniprotO48818

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009826ISS, NASGene Ontologyunidimensional cell growth1 2
GO:0009828ISS, NASGene Ontologyplant-type cell wall loosening1 2
GO:0009831ISSGene Ontologyplant-type cell wall modification involved in multidimensional cell growth1
GO:0006949IEP, RCA, UniProtsyncytium formation1 2 3 4 5 6
GO:0009664IEAUniProtplant-type cell wall organization1 2 3 4
GO:0071669IEAPLAZA Homologyplant-type cell wall organization or biogenesisHOM03D000073
GO:0071555IEAPLAZA Homologycell wall organizationHOM03D000073
GO:0045229IEAPLAZA Homologyexternal encapsulating structure organizationHOM03D000073
GO:0071554IEAPLAZA Homologycell wall organization or biogenesisHOM03D000073
GO:0071840IEAPLAZA Homologycellular component organization or biogenesisHOM03D000073
GO:0016043IEAPLAZA Homologycellular component organizationHOM03D000073

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005576IEA, ISMUniProtextracellular region1 2 3 4 5
GO:0009505IDAUniProtplant-type cell wall1 2 3 4 5
GO:0005829IDAUniProtcytosol1 2 3 4 5
GO:0009506IDAUniProtplasmodesma1 2 3 4 5
GO:0016020IEAUniProtmembrane1 2 3 4

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007118Expansin/Lol pI
IPR002963Expansin
IPR007117Expansin, cellulose-binding-like domain
IPR009009RlpA-like double-psi beta-barrel domain
IPR007112Expansin/pollen allergen, DPBB domain
IPR014733Barwin-like endoglucanase

Mapman id Description
10.7cell wall.modification
SignalP Description
SignalP-noTMSignal Peptide detected using noTM network