PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A03	17	CH_bra_140	3	3	0.00000751186
Eucalyptus grandis	scaffold_4	17	CH_egr_767	3	10	0.000280931
Glycine max	Gm01	17	CH_gma_189	4	7	0.000000394773
Glycine max	Gm05	17	CH_gma_417	3	6	0.00034758
Glycine max	Gm08	17	CH_gma_418	3	6	0.00034758
Glycine max	Gm11	17	CH_gma_416	3	6	0.00034758
Glycine max	Gm19	17	CH_gma_296	3	3	0.0000174054
Malus domestica	10	17	CH_mdo_159	3	4	0.0000196803
Populus trichocarpa	Chr01	17	CH_ptr_390	3	8	0.000203012
Prunus persica	scaffold_5	17	CH_ppe_113	5	13	0.000000000206055
Ricinus communis	30190	17	CH_rco_206	3	11	0.000200052
Vitis vinifera	chr2	17	CH_vvi_305	3	8	0.0000582515
Zea mays	2	17	CH_zma_55	5	17	0.00000000994344

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V