PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Type: Mapman term
Identifier: 17.3.1.2.6
Description: hormone metabolism.brassinosteroid.synthesis-degradation.sterols.DWF7

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_3	17	CH_aly_94	2	3	0.000568206
Arabidopsis thaliana	3	17	CH_ath_287	2	2	0.0000595203
Brassica rapa	A01	17	CH_bra_272	2	2	0.00074612
Brassica rapa	A03	17	CH_bra_73	3	3	0.0000000742279
Solanum lycopersicum	ch02	17	CH_sly_369	2	2	0.000172776
Vitis vinifera	chr1	17	CH_vvi_366	2	2	0.000228189

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V