PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_353	3	6	0.000275886
Brassica rapa	A06	17	CH_bra_23	5	7	0.0000000000777737
Brassica rapa	A08	17	CH_bra_50	4	4	0.00000000648012
Brassica rapa	A09	17	CH_bra_49	4	4	0.00000000648012
Capsella rubella	scaffold_1	17	CH_cru_165	3	3	0.00000249919
Oryza sativa ssp. japonica	2	17	CH_osa_67	5	7	0.0000000000523023
Oryza sativa ssp. japonica	6	17	CH_osa_26	7	8	4.49472e-18
Populus trichocarpa	Chr01	17	CH_ptr_294	3	4	0.00000681835
Populus trichocarpa	Chr03	17	CH_ptr_293	3	4	0.00000681835
Ricinus communis	28333	17	CH_rco_152	3	3	0.0000081004
Ricinus communis	29686	17	CH_rco_70	4	4	0.00000000517089
Zea mays	9	17	CH_zma_205	3	5	0.000170351

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V