PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsella rubella	scaffold_1	13	CH_cru_244	3	3	0.00000104861
Carica papaya	supercontig_81	15	CH_cpa_28	2	2	0.000970827
Gossypium raimondii	Chr09	13	CH_gra_321	3	3	0.00000488156
Medicago truncatula	chr1	13	CH_mtr_505	4	9	0.000000223136
Physcomitrella patens	scaffold_147	13	CH_ppa_33	3	3	0.00000635303
Populus trichocarpa	Chr10	13	CH_ptr_187	5	10	0.0000000000994843
Ricinus communis	29904	13	CH_rco_205	3	3	0.0000017358
Ricinus communis	29938	13	CH_rco_327	3	9	0.000145539

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V