PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Glycine max	Gm18	13	CH_gma_414	4	17	0.00000455575
Oryza sativa ssp. japonica	4	14	CH_osa_138	16	288	0.000454851
Oryza sativa ssp. japonica	4	16	CH_osa_38	16	288	0.000331741
Populus trichocarpa	Chr17	13	CH_ptr_338	5	38	0.000000266533
Prunus persica	scaffold_1	13	CH_ppe_293	13	71	0.0000000787823
Prunus persica	scaffold_5	13	CH_ppe_654	6	15	0.000375233
Prunus persica	scaffold_1	14	CH_ppe_55	30	259	2.94674e-16
Prunus persica	scaffold_1	14	CH_ppe_99	20	290	0.0000132228
Prunus persica	scaffold_8	14	CH_ppe_119	19	300	0.000147487

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V