PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Citrullus lanatus	Chr2	4	CH_cla_27	10	292	0.0000450703
Citrullus lanatus	Chr2	5	CH_cla_30	11	212	0.000012913
Citrullus lanatus	Chr2	6	CH_cla_43	11	212	0.0000164229
Medicago truncatula	chr5	1	CH_mtr_332	5	13	0.00000550806
Medicago truncatula	chr5	2	CH_mtr_419	5	13	0.0000217913
Medicago truncatula	chr5	3	CH_mtr_531	5	13	0.0000271606
Oryza sativa ssp. japonica	5	1	CH_osa_221	6	50	0.0000139086
Oryza sativa ssp. japonica	1	2	CH_osa_213	6	34	0.0000124368
Oryza sativa ssp. japonica	5	2	CH_osa_316	6	50	0.000142339
Solanum lycopersicum	ch05	1	CH_sly_162	5	5	0.000000167696
Solanum lycopersicum	ch05	2	CH_sly_178	5	5	0.000000357052
Solanum lycopersicum	ch05	3	CH_sly_148	6	6	0.00000000235751
Solanum tuberosum	chr05	1	CH_stu_97	7	7	0.000000000000352096
Solanum tuberosum	chr05	1	CH_stu_39	11	12	6.86433e-22
Solanum tuberosum	chr05	2	CH_stu_128	7	7	0.00000000000365673
Solanum tuberosum	chr05	3	CH_stu_170	7	7	0.00000000000441621
Solanum tuberosum	chr05	4	CH_stu_37	11	12	6.86433e-22
Solanum tuberosum	chr06	5	CH_stu_118	10	98	0.00000445003
Solanum tuberosum	chr06	6	CH_stu_136	11	98	0.00000023887
Vitis vinifera	chr6	4	CH_vvi_86	10	254	0.0000586108

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V