Functional clusters
Information
- Type
- GO term
- Identifier
- GO:0045229
- Description
- external encapsulating structure organization
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis lyrata | scaffold_5 | 2 | CH_aly_266 | 9 | 77 | 0.000266222 |
Arabidopsis lyrata | scaffold_5 | 3 | CH_aly_380 | 9 | 77 | 0.000659567 |
Brassica rapa | A02 | 2 | CH_bra_127 | 5 | 6 | 0.0000140301 |
Brassica rapa | A02 | 3 | CH_bra_182 | 5 | 6 | 0.0000267642 |
Gossypium raimondii | Chr08 | 6 | CH_gra_85 | 12 | 131 | 0.000102461 |
Available child term results
GO term | Description | Number of clusters |
---|---|---|
GO:0009664 | plant-type cell wall organization | 50 |
GO:0009827 | plant-type cell wall modification | 2 |
GO:0009828 | plant-type cell wall loosening | 3 |
GO:0009829 | cell wall modification involved in fruit ripening | 2 |
GO:0009830 | cell wall modification involved in abscission | 10 |
GO:0010215 | cellulose microfibril organization | 32 |
GO:0010246 | rhamnogalacturonan I biosynthetic process | 4 |
GO:0010584 | pollen exine formation | 14 |
GO:0042545 | cell wall modification | 66 |
GO:0052541 | plant-type cell wall cellulose metabolic process | 2 |
GO:0071555 | cell wall organization | 8 |
GO:0071668 | plant-type cell wall assembly | 8 |
GO:0080110 | sporopollenin biosynthetic process | 2 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |