PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Oryza sativa ssp. japonica	1	4	CH_osa_163	10	248	0.000885306
Solanum lycopersicum	ch07	6	CH_sly_96	15	195	0.00000207656

GO term	Description	Number of clusters
GO:0003333	amino acid transmembrane transport	22
GO:0010107	potassium ion import	1
GO:0015986	ATP synthesis coupled proton transport	7
GO:0034755	iron ion transmembrane transport	8
GO:0034775	glutathione transmembrane transport	6
GO:0035434	copper ion transmembrane transport	30
GO:0035674	tricarboxylic acid transmembrane transport	2
GO:0035725	sodium ion transmembrane transport	8
GO:0070588	calcium ion transmembrane transport	7
GO:0071423	malate transmembrane transport	4
GO:0071435	potassium ion export	14
GO:0071577	zinc ion transmembrane transport	23
GO:0071805	potassium ion transmembrane transport	41
GO:0072488	ammonium transmembrane transport	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V