PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Eucalyptus grandis	scaffold_2	5	CH_egr_168	10	193	0.0000000248412
Medicago truncatula	chr4	2	CH_mtr_469	4	11	0.0000602724
Medicago truncatula	chr5	2	CH_mtr_139	8	42	0.000000000048637
Medicago truncatula	chr7	2	CH_mtr_117	8	33	0.00000000000577921
Medicago truncatula	chr4	3	CH_mtr_605	4	11	0.000090288
Medicago truncatula	chr5	3	CH_mtr_188	8	42	0.000000000110974
Medicago truncatula	chr7	3	CH_mtr_151	8	33	0.0000000000131985
Medicago truncatula	chr7	5	CH_mtr_69	10	93	0.00000000000440782
Medicago truncatula	chr7	6	CH_mtr_90	10	93	0.0000000000125741
Solanum lycopersicum	ch01	1	CH_sly_15	11	18	6.16917e-26
Solanum lycopersicum	ch01	2	CH_sly_23	11	18	5.10353e-22
Solanum lycopersicum	ch01	4	CH_sly_15	11	18	6.16917e-26
Solanum lycopersicum	ch01	5	CH_sly_23	11	18	5.10353e-22

GO term	Description	Number of clusters
GO:0005680	anaphase-promoting complex	11
GO:0019005	SCF ubiquitin ligase complex	5
GO:0031463	Cul3-RING ubiquitin ligase complex	2

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V