PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Brassica rapa	A01	5	CH_bra_27	10	61	0.000147833
Brassica rapa	A01	6	CH_bra_36	11	61	0.0000496367
Fragaria vesca	scf0513160	2	CH_fve_76	12	75	0.00000000506068
Fragaria vesca	scf0513160	3	CH_fve_120	12	75	0.0000000323223
Fragaria vesca	scf0513160	5	CH_fve_21	12	75	0.00000000506068
Fragaria vesca	scf0513160	6	CH_fve_37	12	75	0.0000000323223
Glycine max	Gm16	4	CH_gma_82	10	97	0.00079183
Gossypium raimondii	Chr08	3	CH_gra_406	4	4	0.000698518
Medicago truncatula	chr7	5	CH_mtr_99	15	166	0.0000000236461
Ricinus communis	30076	2	CH_rco_137	5	7	0.0000181191
Ricinus communis	30076	3	CH_rco_80	11	45	0.0000000147161
Ricinus communis	30076	6	CH_rco_27	11	45	0.0000000147161
Thellungiella parvula	ch2-4	4	CH_tpa_5	10	34	0.00000000582281
Thellungiella parvula	ch2-4	5	CH_tpa_10	10	34	0.0000000519874
Thellungiella parvula	ch3-1	5	CH_tpa_12	12	69	0.000000277937
Thellungiella parvula	ch2-4	6	CH_tpa_14	10	34	0.000000165589
Thellungiella parvula	ch3-1	6	CH_tpa_11	13	69	0.0000000563454
Theobroma cacao	scaffold_5	2	CH_tca_253	4	4	0.0000886272
Theobroma cacao	scaffold_1	3	CH_tca_402	8	54	0.000433047
Theobroma cacao	scaffold_5	3	CH_tca_323	4	4	0.000134711

GO term	Description	Number of clusters
GO:0000774	adenyl-nucleotide exchange factor activity	4
GO:0001671	ATPase activator activity	3
GO:0004857	enzyme inhibitor activity	11
GO:0004861	cyclin-dependent protein serine/threonine kinase inhibitor activity	1
GO:0004864	protein phosphatase inhibitor activity	17
GO:0004866	endopeptidase inhibitor activity	129
GO:0004867	serine-type endopeptidase inhibitor activity	112
GO:0004869	cysteine-type endopeptidase inhibitor activity	70
GO:0005093	Rab GDP-dissociation inhibitor activity	4
GO:0005094	Rho GDP-dissociation inhibitor activity	3
GO:0005097	Rab GTPase activator activity	6
GO:0008060	ARF GTPase activator activity	1
GO:0008191	metalloendopeptidase inhibitor activity	4
GO:0008428	ribonuclease inhibitor activity	6
GO:0008601	protein phosphatase type 2A regulator activity	1
GO:0010521	telomerase inhibitor activity	2
GO:0015066	alpha-amylase inhibitor activity	11
GO:0016004	phospholipase activator activity	6
GO:0019209	kinase activator activity	6
GO:0019211	phosphatase activator activity	3
GO:0030414	peptidase inhibitor activity	6
GO:0046863	ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	2
GO:0046910	pectinesterase inhibitor activity	20
GO:0060589	nucleoside-triphosphatase regulator activity	1
GO:0090353	polygalacturonase inhibitor activity	19

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V