PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_62	3	CH_cpa_107	3	3	0.00000169659
Carica papaya	supercontig_30	7	CH_cpa_4	2	2	0.000107434
Carica papaya	supercontig_30	8	CH_cpa_5	2	2	0.000107434
Carica papaya	supercontig_30	9	CH_cpa_9	2	2	0.000107434
Eucalyptus grandis	scaffold_7	1	CH_egr_418	3	7	0.0000100309
Eucalyptus grandis	scaffold_7	2	CH_egr_528	3	7	0.0000100309
Eucalyptus grandis	scaffold_7	3	CH_egr_608	3	7	0.000015045
Glycine max	Gm11	3	CH_gma_445	4	52	0.000296861
Glycine max	Gm12	3	CH_gma_436	4	50	0.000252678
Malus domestica	14	3	CH_mdo_75	5	34	0.0000000805396
Medicago truncatula	chr1	2	CH_mtr_692	2	2	0.000859001

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V