PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00185	1	CH_atr_226	2	2	0.000790358
Amborella trichopoda	scaffold00185	2	CH_atr_242	2	2	0.000790358
Citrullus lanatus	Chr2	1	CH_cla_210	2	2	0.000851136
Citrullus lanatus	Chr2	2	CH_cla_259	2	2	0.000851136
Malus domestica	6	1	CH_mdo_236	2	2	0.000692377
Malus domestica	6	2	CH_mdo_285	2	2	0.000692377
Malus domestica	7	3	CH_mdo_177	3	10	0.0000321869
Medicago truncatula	chr4	3	CH_mtr_859	2	2	0.000859001
Solanum lycopersicum	ch01	1	CH_sly_130	4	11	0.0000000130782
Solanum lycopersicum	ch01	2	CH_sly_130	4	11	0.0000000130782
Solanum lycopersicum	ch01	3	CH_sly_121	5	19	0.000000000118882
Solanum tuberosum	chr01	1	CH_stu_73	6	12	0.00000000000000574099
Solanum tuberosum	chr01	2	CH_stu_74	6	12	0.00000000000000574099
Solanum tuberosum	chr01	3	CH_stu_62	8	17	1.90893e-20

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V