PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0016301
Description: kinase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00088	1	CH_atr_173	7	11	0.000199856
Amborella trichopoda	scaffold00088	2	CH_atr_198	7	11	0.000270291
Arabidopsis thaliana	1	3	CH_ath_324	10	20	0.000150025
Arabidopsis thaliana	1	6	CH_ath_120	10	20	0.000150025
Citrullus lanatus	Chr10	3	CH_cla_310	9	18	0.000782498
Fragaria vesca	LG7	6	CH_fve_89	21	101	0.000134278
Malus domestica	5	4	CH_mdo_27	22	127	0.0000485811
Malus domestica	5	5	CH_mdo_35	22	127	0.0000944697
Malus domestica	5	6	CH_mdo_50	24	127	0.000205884
Solanum lycopersicum	ch12	1	CH_sly_226	16	48	0.00000488704
Solanum lycopersicum	ch12	2	CH_sly_242	16	48	0.00000652007
Solanum lycopersicum	ch12	3	CH_sly_287	17	48	0.00000294067
Solanum lycopersicum	ch12	4	CH_sly_71	16	48	0.00000488704
Solanum lycopersicum	ch12	5	CH_sly_75	16	48	0.00000652007
Solanum lycopersicum	ch12	6	CH_sly_100	17	48	0.00000294067
Solanum tuberosum	chr08	2	CH_stu_269	8	8	0.000000768179

Available child term results

GO term	Description	Number of clusters
GO:0000155	phosphorelay sensor kinase activity	4
GO:0000823	inositol-1,4,5-trisphosphate 6-kinase activity	4
GO:0003872	6-phosphofructokinase activity	2
GO:0003873	6-phosphofructo-2-kinase activity	3
GO:0004001	adenosine kinase activity	5
GO:0004017	adenylate kinase activity	1
GO:0004072	aspartate kinase activity	3
GO:0004140	dephospho-CoA kinase activity	9
GO:0004143	diacylglycerol kinase activity	7
GO:0004370	glycerol kinase activity	6
GO:0004371	glycerone kinase activity	10
GO:0004385	guanylate kinase activity	4
GO:0004413	homoserine kinase activity	5
GO:0004417	hydroxyethylthiazole kinase activity	1
GO:0004430	1-phosphatidylinositol 4-kinase activity	4
GO:0004550	nucleoside diphosphate kinase activity	1
GO:0004594	pantothenate kinase activity	5
GO:0004618	phosphoglycerate kinase activity	35
GO:0004672	protein kinase activity	32
GO:0004674	protein serine/threonine kinase activity	416
GO:0004675	transmembrane receptor protein serine/threonine kinase activity	5
GO:0004683	calmodulin-dependent protein kinase activity	6
GO:0004693	cyclin-dependent protein serine/threonine kinase activity	4
GO:0004707	MAP kinase activity	4
GO:0004709	MAP kinase kinase kinase activity	4
GO:0004713	protein tyrosine kinase activity	157
GO:0004743	pyruvate kinase activity	1
GO:0004747	ribokinase activity	3
GO:0004765	shikimate kinase activity	5
GO:0004797	thymidine kinase activity	3
GO:0004849	uridine kinase activity	3
GO:0004856	xylulokinase activity	4
GO:0008440	inositol-1,4,5-trisphosphate 3-kinase activity	2
GO:0008478	pyridoxal kinase activity	3
GO:0008481	sphinganine kinase activity	9
GO:0008531	riboflavin kinase activity	6
GO:0008972	phosphomethylpyrimidine kinase activity	4
GO:0009927	histidine phosphotransfer kinase activity	2
GO:0016307	phosphatidylinositol phosphate kinase activity	6
GO:0016308	1-phosphatidylinositol-4-phosphate 5-kinase activity	2
GO:0019200	carbohydrate kinase activity	1
GO:0019201	nucleotide kinase activity	1
GO:0019205	nucleobase-containing compound kinase activity	5
GO:0032942	inositol tetrakisphosphate 2-kinase activity	1
GO:0033862	UMP kinase activity	5
GO:0035299	inositol pentakisphosphate 2-kinase activity	9
GO:0042736	NADH kinase activity	1
GO:0046522	S-methyl-5-thioribose kinase activity	18
GO:0047325	inositol tetrakisphosphate 1-kinase activity	1
GO:0047334	diphosphate-fructose-6-phosphate 1-phosphotransferase activity	4
GO:0047912	galacturonokinase activity	2
GO:0047940	glucuronokinase activity	2
GO:0050521	alpha-glucan, water dikinase activity	4

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V