PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0015074
Description: DNA integration

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Chlamydomonas reinhardtii	chromosome_8	3	CH_cre_100	3	3	0.00062151
Chlamydomonas reinhardtii	scaffold_21	3	CH_cre_41	5	12	0.00000474471
Oryza sativa ssp. japonica	10	1	CH_osa_224	14	31	0.0000160202
Oryza sativa ssp. japonica	10	2	CH_osa_220	14	31	0.0000162915
Oryza sativa ssp. japonica	10	3	CH_osa_225	15	32	0.00000368504
Oryza sativa ssp. japonica	12	3	CH_osa_202	22	69	0.00000151759
Oryza sativa ssp. japonica	10	4	CH_osa_63	50	284	0.0000000275292
Oryza sativa ssp. japonica	10	4	CH_osa_107	14	31	0.0000160202
Oryza sativa ssp. japonica	9	4	CH_osa_159	37	236	0.000725892
Oryza sativa ssp. japonica	10	5	CH_osa_117	14	31	0.0000162915
Oryza sativa ssp. japonica	10	5	CH_osa_71	50	284	0.0000000288643
Oryza sativa ssp. japonica	9	5	CH_osa_173	37	236	0.000750407
Oryza sativa ssp. japonica	10	6	CH_osa_117	15	32	0.00000368504
Oryza sativa ssp. japonica	10	6	CH_osa_73	53	284	0.00000000317174
Oryza sativa ssp. japonica	12	6	CH_osa_163	45	298	0.00030216
Oryza sativa ssp. japonica	6	6	CH_osa_152	26	116	0.000138988
Oryza sativa ssp. japonica	10	7	CH_osa_41	13	31	0.000333304
Oryza sativa ssp. japonica	10	7	CH_osa_27	14	32	0.0000260244
Oryza sativa ssp. japonica	12	7	CH_osa_36	21	81	0.000193847
Oryza sativa ssp. japonica	6	7	CH_osa_44	12	29	0.000954563
Oryza sativa ssp. japonica	10	8	CH_osa_42	13	31	0.000338549
Oryza sativa ssp. japonica	10	8	CH_osa_24	14	32	0.0000264701
Oryza sativa ssp. japonica	12	8	CH_osa_36	21	81	0.000198344
Oryza sativa ssp. japonica	6	8	CH_osa_54	12	29	0.000968468
Oryza sativa ssp. japonica	10	9	CH_osa_47	13	31	0.000409172
Oryza sativa ssp. japonica	10	9	CH_osa_26	14	32	0.0000325295
Oryza sativa ssp. japonica	12	9	CH_osa_41	21	81	0.000261921
Oryza sativa ssp. japonica	10	10	CH_osa_55	13	31	0.000333304
Oryza sativa ssp. japonica	10	10	CH_osa_36	14	32	0.0000260244
Oryza sativa ssp. japonica	6	10	CH_osa_65	12	29	0.000954563
Oryza sativa ssp. japonica	9	10	CH_osa_64	37	236	0.00087956
Oryza sativa ssp. japonica	10	11	CH_osa_67	13	31	0.000338549
Oryza sativa ssp. japonica	10	11	CH_osa_47	14	32	0.0000264701
Oryza sativa ssp. japonica	12	11	CH_osa_50	46	305	0.000041605
Oryza sativa ssp. japonica	6	11	CH_osa_76	12	29	0.000968468
Oryza sativa ssp. japonica	9	11	CH_osa_75	37	236	0.000909603
Oryza sativa ssp. japonica	10	12	CH_osa_74	13	31	0.000409172
Oryza sativa ssp. japonica	10	12	CH_osa_52	14	32	0.0000325295
Oryza sativa ssp. japonica	12	12	CH_osa_50	47	305	0.0000219786
Prunus persica	scaffold_8	1	CH_ppe_235	4	9	0.0000250964
Prunus persica	scaffold_8	2	CH_ppe_265	4	9	0.0000351413
Prunus persica	scaffold_8	3	CH_ppe_376	4	9	0.000128582
Theobroma cacao	scaffold_5	1	CH_tca_303	6	31	0.000735896
Theobroma cacao	scaffold_5	2	CH_tca_367	6	31	0.000815299
Theobroma cacao	scaffold_1	4	CH_tca_60	12	191	0.0000486879
Theobroma cacao	scaffold_1	5	CH_tca_63	12	191	0.0000592404

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V