PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Carica papaya	supercontig_114	2	CH_cpa_47	3	3	0.000000282765
Carica papaya	supercontig_114	3	CH_cpa_84	3	3	0.000000282765
Citrullus lanatus	Chr10	2	CH_cla_226	2	2	0.000510682
Citrullus lanatus	Chr10	3	CH_cla_287	2	2	0.000510682
Citrus sinensis	scaffold00303	2	CH_csi_193	2	2	0.000694887
Citrus sinensis	scaffold00303	3	CH_csi_246	2	2	0.000694887
Cucumis melo	CM3.5_scaffold00011	2	CH_cme_248	2	2	0.000765462
Cucumis melo	CM3.5_scaffold00011	3	CH_cme_345	2	2	0.000765462
Eucalyptus grandis	scaffold_1	2	CH_egr_180	5	6	0.000000000000242268
Eucalyptus grandis	scaffold_1	3	CH_egr_204	5	6	0.000000000000242268
Medicago truncatula	chr1	2	CH_mtr_630	2	2	0.000460179
Medicago truncatula	chr1	3	CH_mtr_791	2	2	0.000460179
Ricinus communis	29805	2	CH_rco_76	3	3	0.00000014465
Ricinus communis	29805	3	CH_rco_106	3	3	0.00000014465
Solanum tuberosum	chr09	2	CH_stu_277	3	4	0.00000108892
Solanum tuberosum	chr09	3	CH_stu_399	3	4	0.00000108892

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V