PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_5	2	CH_aly_309	4	13	0.000578345
Arabidopsis lyrata	scaffold_5	3	CH_aly_361	4	13	0.000578345
Arabidopsis lyrata	scaffold_1	5	CH_aly_32	11	285	0.00000175737
Arabidopsis lyrata	scaffold_1	6	CH_aly_42	11	285	0.00000175737
Brassica rapa	A08	2	CH_bra_170	4	7	0.0000683285
Brassica rapa	A08	3	CH_bra_210	4	7	0.0000735993
Eucalyptus grandis	scaffold_4	2	CH_egr_214	6	10	0.00000000000624837
Eucalyptus grandis	scaffold_4	3	CH_egr_247	6	10	0.00000000000745699
Prunus persica	scaffold_5	2	CH_ppe_145	4	4	0.0000000521191
Prunus persica	scaffold_5	3	CH_ppe_178	4	4	0.0000000588442
Solanum tuberosum	chr08	2	CH_stu_158	5	6	0.000000000153378
Solanum tuberosum	chr08	3	CH_stu_223	5	6	0.000000000205938

GO term	Description	Number of clusters
GO:0070370	cellular heat acclimation	1

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V