PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	1	CH_aly_153	4	25	0.0000458595
Capsella rubella	scaffold_1	1	CH_cru_150	3	4	0.0000398263
Capsella rubella	scaffold_1	2	CH_cru_292	3	4	0.000430853
Capsella rubella	scaffold_1	3	CH_cru_350	3	4	0.000529923
Malus domestica	13	1	CH_mdo_80	3	3	0.00000145417
Malus domestica	13	2	CH_mdo_125	3	3	0.0000158521
Malus domestica	13	3	CH_mdo_180	3	3	0.0000340691
Medicago truncatula	chr1	1	CH_mtr_81	5	6	0.000000000000463464
Medicago truncatula	chr1	2	CH_mtr_100	7	22	0.000000000000698545
Medicago truncatula	chr1	3	CH_mtr_130	7	22	0.00000000000171002

GO term	Description	Number of clusters
GO:0000266	mitochondrial fission	5
GO:0006627	protein processing involved in protein targeting to mitochondrion	3
GO:0033615	mitochondrial proton-transporting ATP synthase complex assembly	3
GO:0045039	protein import into mitochondrial inner membrane	5
GO:0045040	protein import into mitochondrial outer membrane	9
GO:0090296	regulation of mitochondrial DNA replication	3

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V