PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0006811
Description: ion transport

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Cucumis melo	CM3.5_scaffold00006	1	CH_cme_94	6	8	0.000005354
Cucumis melo	CM3.5_scaffold00006	2	CH_cme_128	6	8	0.0000288198
Cucumis melo	CM3.5_scaffold00006	3	CH_cme_197	6	8	0.0000467928
Eucalyptus grandis	scaffold_10	6	CH_egr_217	11	24	0.000000255995
Prunus persica	scaffold_6	4	CH_ppe_117	21	300	0.000622185
Solanum lycopersicum	ch10	6	CH_sly_144	11	49	0.000166425

Available child term results

GO term	Description	Number of clusters
GO:0003333	amino acid transmembrane transport	22
GO:0006812	cation transport	13
GO:0006814	sodium ion transport	1
GO:0006816	calcium ion transport	1
GO:0006817	phosphate ion transport	40
GO:0006820	anion transport	2
GO:0006826	iron ion transport	5
GO:0006829	zinc ion transport	1
GO:0006842	tricarboxylic acid transport	2
GO:0006850	mitochondrial pyruvate transport	13
GO:0006865	amino acid transport	7
GO:0010107	potassium ion import	1
GO:0010155	regulation of proton transport	10
GO:0010351	lithium ion transport	4
GO:0015672	monovalent inorganic cation transport	6
GO:0015684	ferrous iron transport	2
GO:0015690	aluminum cation transport	2
GO:0015692	lead ion transport	4
GO:0015706	nitrate transport	2
GO:0015711	organic anion transport	1
GO:0015727	lactate transport	2
GO:0015743	malate transport	45
GO:0015746	citrate transport	11
GO:0015802	basic amino acid transport	6
GO:0015804	neutral amino acid transport	4
GO:0015810	aspartate transport	8
GO:0015812	gamma-aminobutyric acid transport	13
GO:0015843	methylammonium transport	13
GO:0015908	fatty acid transport	3
GO:0015986	ATP synthesis coupled proton transport	7
GO:0015992	proton transport	4
GO:0030001	metal ion transport	80
GO:0032973	amino acid export	1
GO:0034220	ion transmembrane transport	2
GO:0034755	iron ion transmembrane transport	8
GO:0034756	regulation of iron ion transport	2
GO:0034775	glutathione transmembrane transport	6
GO:0035434	copper ion transmembrane transport	30
GO:0035674	tricarboxylic acid transmembrane transport	2
GO:0035725	sodium ion transmembrane transport	8
GO:0043090	amino acid import	4
GO:0043268	positive regulation of potassium ion transport	4
GO:0044070	regulation of anion transport	2
GO:0046942	carboxylic acid transport	4
GO:0051928	positive regulation of calcium ion transport	3
GO:0051938	L-glutamate import	2
GO:0070588	calcium ion transmembrane transport	7
GO:0070838	divalent metal ion transport	4
GO:0071423	malate transmembrane transport	4
GO:0071435	potassium ion export	14
GO:0071577	zinc ion transmembrane transport	23
GO:0071805	potassium ion transmembrane transport	41
GO:0072488	ammonium transmembrane transport	2
GO:0080143	regulation of amino acid export	12
GO:0080160	selenate transport	2
GO:2001142	nicotinate transport	5

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V