| Matrix_101 | ERF5 | Not available | Upstream | -568 |
| Matrix_104 | PI | Not available | Upstream | -1556 |
| Matrix_109 | GBF3 | Not available | Upstream | -1696 |
| Matrix_111 | ABF3 | Not available | Upstream | -1554 |
| Matrix_113 | ABI5 | Not available | Upstream | -1556 |
| | | Upstream | -1554 |
| Matrix_122 | ABF1;AREB2 | Not available | Upstream | -1556 |
| | | Upstream | -1555 |
| Matrix_129 | ABF1 | Not available | Upstream | -1555 |
| Matrix_134 | ABF1 | Not available | Upstream | -1555 |
| | | Upstream | -1554 |
| Matrix_138 | RRTF1 | Not available | Upstream | -567 |
| Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -566 |
| Matrix_166 | TGA4 | Not available | Upstream | -1694 |
| Matrix_192 | FHY3/FAR1 | Not available | Upstream | -1554 |
| Matrix_214 | AP1 | Not available | Upstream | -1557 |
| Matrix_224 | ERF1 | Not available | Upstream | -567 |
| Matrix_234 | RAP2.3 | Not available | Upstream | -568 |
| Matrix_261 | ATERF-1 | Not available | Upstream | -567 |
| Matrix_264 | ATAREB1 | Not available | Upstream | -1555 |
| Matrix_272 | DEAR4 | Not available | Upstream | -568 |
| Matrix_287 | ERF2 | Not available | Upstream | -568 |
| Matrix_295 | ERF1 | Not available | Upstream | -566 |
| Matrix_296 | GBF2 | Not available | Upstream | -1695 |
| Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -1695 |
| Matrix_301 | PIL5 | Not available | Upstream | -1560 |
| Matrix_306 | TGA1 | TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -1694 |
| Matrix_331 | GBF1 | Not available | Upstream | -1696 |
| Matrix_334 | AT3G23230 | Not available | Upstream | -567 |
| Matrix_343 | AT2G33710 | Not available | Upstream | -568 |
| Matrix_355 | ERF10;ERF11 | Not available | Upstream | -567 |
| Matrix_360 | ORA59 | Not available | Upstream | -566 |
| Matrix_378 | ATERF1 | Not available | Upstream | -568 |
| Matrix_396 | AP3 | Not available | Upstream | -584 |
| Matrix_399 | TGA1 | Not available | Upstream | -1694 |
| Matrix_403 | BZR1 | Not available | Upstream | -1557 |
| Matrix_406 | ATERF-7 | Not available | Upstream | -566 |
| Matrix_409 | DEAR3 | Not available | Upstream | -567 |
| Matrix_426 | CRF1;CRF2 | Not available | Upstream | -567 |
| Matrix_438 | AtbZIP63 | Not available | Upstream | -1695 |
| Matrix_443 | AGL15 | Not available | Upstream | -1557 |
| Matrix_45 | DRN | Not available | Upstream | -566 |
| Matrix_462 | ATERF-8 | Not available | Upstream | -566 |
| Matrix_480 | BES1 | Not available | Upstream | -1556 |
| Matrix_484 | ATERF13 | Not available | Upstream | -566 |
| Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -567 |
| Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -567 |
| Matrix_517 | ERF12 | Not available | Upstream | -566 |
| Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -1694 |
| Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -567 |
| Matrix_91 | CRF3 | Not available | Upstream | -567 |
| Motif_100 | DREB2A;DREB1A | Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses | Upstream | -1559 |
| Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -1553 |
| Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -1553 |
| Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -1554 |
| | | Upstream | -1553 |
| Motif_243 | TELOBOXATEEF1AA1 | telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems | Upstream | -583 |
| Motif_244 | ABRE-like binding site motif | Not available | Upstream | -1555 |
| | | Upstream | -1553 |
| Motif_249 | DPBF1&2 binding site motif | A novel class of bZIP transcription factors, DPBF-1 and 2 (Dc3 promoter-binding factor-1 and 2) binding core sequence; Found in the carrot Dc3 gene promoter; Dc3 expression is normally embryo-specific, and also can be induced by ABA; The Arabidopsis abscisic acid response gene ABI5 encodes a bZIP transcription factor; abi5 mutant have a pleiotropic defects in ABA response; ABI5 regulates a subset of late embryogenesis-abundant genes; GIA1 (growth-insensitivity to ABA) is identical to ABI5; Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system | Upstream | -1554 |
| | | Upstream | -1553 |
| Motif_258 | -10PEHVPSBD | -10 promoter element found in the barley (H.v.) chloroplast psbD gene promoter; Involved in the expression of the plastid gene psbD which encodes a photosystem II reaction center chlorophyll-binding protein that is activated by blue, white or UV-A light | Downstream | 11242 |
| Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Upstream | -679 |
| | | Upstream | -676 |
| | | Downstream | 11240 |
| Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -565 |
| Motif_330 | ANAERO5CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1); Arbitrary named ANAERO5CONSENSUS by the PLACEdb curator | Upstream | -848 |
| Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -1553 |
| Motif_347 | OPAQUE2ZMB32 | opaque-2 binding site of maize b-32 (type I ribosome-inactivating protein gene); O2; O2S; O2S and GARE form a gibberellin response complex (GARC) | Upstream | -1694 |
| Motif_358 | UP2ATMSD | Up2 motif found in 193 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis | Upstream | -583 |
| Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | Upstream | -1694 |
| Motif_440 | TGA1 binding site motif | Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -1694 |
| Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Downstream | 11226 |
| | | Downstream | 11273 |
| Motif_54 | LTREATLTI78 | Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana | Upstream | -1558 |
| Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -1695 |
| Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -19 |
| Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -1555 |
| | | Upstream | -1552 |
| Motif_652 | AUXRETGA2GMGH3 | TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224 | Upstream | -1695 |
| Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 11226 |
| | | Downstream | 11273 |
| Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -659 |
| Motif_72 | GADOWNAT | Sequence present in 24 genes in the GA-down regulated d1 cluster (106 genes) found in Arabidopsis seed germination; This motif is similar to ABRE | Upstream | -1555 |
| | | Upstream | -1552 |
| Motif_95 | UPRE2AT | XBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR | Upstream | -1694 |
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