Gene: PT05G08380 (Populus trichocarpa)

Overview top

Gene Identifier
PT05G08380
Transcript Identifier
PT05G08380.1
Gene Type
Coding gene
Location
Chr05 : 6224886-6235848 : positive

Family

Gene family
HOM03D004644
(43 genes in 29 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
protein ligase RKP
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidPotri.005G083800.1
idPAC:27027695

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006511IEAGenome Projectubiquitin-dependent protein catabolic process
GO:0016567IEAGenome Projectprotein ubiquitination
GO:0060154ISOPLAZA Integrative Orthologycellular process regulating host cell cycle in response to virusAT2G22010
GO:0051726ISOPLAZA Integrative Orthologyregulation of cell cycleAT2G22010
GO:0009615ISOPLAZA Integrative Orthologyresponse to virusAT2G22010
GO:0051603ISOPLAZA Integrative Orthologyproteolysis involved in cellular protein catabolic processAT2G22010
GO:0030163ISOPLAZA Integrative Orthologyprotein catabolic processAT2G22010
GO:0044267IEAPLAZA Homologycellular protein metabolic processHOM03D004644

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAGenome Projectprotein binding
GO:0034450IEAGenome Projectubiquitin-ubiquitin ligase activity
GO:0008270IEAInterProzinc ion binding
GO:0004842ISOPLAZA Integrative Orthologyubiquitin-protein ligase activityAT2G22010

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000151IEAGenome Projectubiquitin ligase complex

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001870B30.2/SPRY domain
IPR019474Ubiquitin conjugation factor E4, core
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR008985Concanavalin A-like lectin/glucanases superfamily
IPR001841Zinc finger, RING-type
IPR018355SPla/RYanodine receptor subgroup
IPR003877SPla/RYanodine receptor SPRY

Mapman id Description
29.5.11.4.2protein.degradation.ubiquitin.E3.RING
No SignalP domains detected for this gene.