View conserved binding sites


Gene
GM05G31350
Description
Probable trehalose-phosphate phosphatase
Alias
Glyma05g31350;Glyma05g31350.1;PAC:26322489;Glyma05g31350.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-789
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-789
Matrix_109GBF3Not availableUpstream-789
Upstream-790
Upstream-791
Upstream-834
Upstream-835
Matrix_113ABI5Not availableUpstream-789
Upstream-790
Upstream-791
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-786
Upstream-787
Matrix_120BEE2Not availableUpstream-790
Matrix_122ABF1;AREB2Not availableUpstream-789
Upstream-790
Matrix_129ABF1Not availableUpstream-790
Matrix_134ABF1Not availableUpstream-790
Upstream-791
Matrix_14ZCW32;AT5G62610Not availableUpstream-790
Upstream-791
Matrix_145GBF4;AT5G44080Not availableUpstream-790
Upstream-791
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-786
Matrix_156POC1Not availableUpstream-789
Upstream-790
Upstream-791
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-790
Matrix_192FHY3/FAR1Not availableUpstream-790
Upstream-791
Upstream-832
Upstream-833
Matrix_194HYH;HY5Not availableUpstream-787
Matrix_196TCP20;AT5G41030Not availableUpstream-272
Upstream-301
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-790
Matrix_214AP1Not availableUpstream-788
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-787
Upstream-790
Upstream-791
Upstream-832
Upstream-833
Matrix_232TCP23Not availableUpstream-273
Upstream-275
Upstream-276
Upstream-328
Matrix_233MYC3Not availableUpstream-790
Upstream-791
Matrix_24POC1Not availableUpstream-786
Matrix_247PIF3Not availableUpstream-790
Matrix_25AP3Not availableUpstream-196
Matrix_259AT1G50680;AT1G51120Not availableUpstream-790
Matrix_264ATAREB1Not availableUpstream-787
Upstream-790
Matrix_278AtbZIP44Not availableUpstream-835
Matrix_280TCP24;TCP1;BRC2;ATTCP18Not availableUpstream-273
Matrix_285DDF1Not availableUpstream-796
Upstream-797
Matrix_292FTQ4Not availableUpstream-797
Upstream-798
Matrix_294MEE35Not availableUpstream-329
Matrix_296GBF2Not availableUpstream-790
Upstream-791
Upstream-835
Upstream-836
Matrix_297TCP15Not availableUpstream-273
Upstream-275
Upstream-276
Matrix_300bZIP68;bZIP16Not availableUpstream-790
Upstream-791
Upstream-835
Upstream-836
Matrix_301PIL5Not availableUpstream-790
Upstream-791
Matrix_305PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-788
Matrix_312ARF11;MP;ARF6;IAA21;ARF8;ARF4Not availableUpstream-797
Matrix_331GBF1Not availableUpstream-789
Upstream-790
Upstream-791
Upstream-834
Upstream-835
Matrix_332SPT;ALCNot availableUpstream-790
Upstream-791
Matrix_338AP2Not availableUpstream-787
Matrix_345POC1Not availableUpstream-266
Upstream-786
Upstream-787
Matrix_348AT5G51910Not availableUpstream-274
Upstream-275
Matrix_356PRR5Not availableUpstream-783
Upstream-787
Upstream-833
Matrix_359FLCNot availableUpstream-788
Matrix_369AT2G18300Not availableUpstream-790
Matrix_389ILR3Not availableUpstream-790
Matrix_403BZR1Not availableUpstream-788
Matrix_42AT2G45680Not availableUpstream-274
Upstream-275
Matrix_435ATHB51Not availableDownstream3096
Matrix_438AtbZIP63Not availableUpstream-790
Upstream-836
Matrix_443AGL15Not availableUpstream-788
Matrix_480BES1Not availableUpstream-790
Matrix_488ABF1Not availableUpstream-789
Upstream-828
Matrix_507TCP3Not availableUpstream-273
Upstream-328
Matrix_515ddf2;ATCBF3;CBF1;CBF4Not availableUpstream-796
Upstream-797
Matrix_53MYC3Not availableUpstream-791
Upstream-792
Matrix_55PIF3Not availableUpstream-789
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-790
Upstream-791
Upstream-837
Matrix_60AT1G01260;AT5G57150Not availableUpstream-790
Upstream-791
Matrix_61ATCBF3Not availableUpstream-795
Upstream-796
Matrix_64PIF5Not availableUpstream-790
Upstream-791
Matrix_65POC1;PIL1Not availableUpstream-790
Upstream-791
Matrix_7PIF4Not availableUpstream-791
Upstream-792
Matrix_77PRR5Not availableUpstream-789
Matrix_80BIM1Not availableUpstream-790
Upstream-791
Matrix_82TCP17Not availableUpstream-329
Matrix_94TCP5Not availableUpstream-329
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-791
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-791
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-790
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-256
Upstream-790
Upstream-791
Motif_244ABRE-like binding site motifNot availableUpstream-789
Upstream-791
Upstream-835
Motif_277ATHB1 binding site motifRecognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificitiesDownstream3095
Motif_279POLASIG3Plant polyA signal; Consensus sequence for plant polyadenylation signalDownstream3094
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-791
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-791
Upstream-837
Motif_352ATHB5 binding site motifConsensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitroDownstream3095
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsIntron1498
Motif_368CBF1 BS in cor15aDeterminants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifsUpstream-795
Motif_371DRE-like promoter motifThe Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental StressesUpstream-797
Upstream-811
Motif_388CPRFPCCHS;AtbZIP1BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA bindingUpstream-790
Motif_391REALPHALGLHCB21REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulationDownstream3098
Motif_399UPRMOTIFIATMotif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.Upstream-836
Motif_440TGA1 binding site motifHex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGGUpstream-836
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-790
Upstream-791
Motif_453HEXMOTIFTAH3H4hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding siteUpstream-838
Motif_454DRECRTCOREATCore motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower)Upstream-797
Upstream-811
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-790
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-792
Upstream-835
Motif_57ABREOSRAB21ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em geneUpstream-792
Motif_576TGACGTVMAMYTGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seedsUpstream-838
Motif_591CBFHVBinding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs)Upstream-797
Upstream-811
Motif_599LREBOXIIPCCHS1;HY5BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expressionUpstream-789
Motif_603SITEIIATCYTCSite II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and riceUpstream-108
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-792
Upstream-835
Motif_638ABRE binding site motifNot availableUpstream-791
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-834
Motif_652AUXRETGA2GMGH3TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224Upstream-835