Matrix_104 | PI | Not available | Upstream | -789 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -789 |
Matrix_109 | GBF3 | Not available | Upstream | -789 |
| | | Upstream | -790 |
| | | Upstream | -791 |
| | | Upstream | -834 |
| | | Upstream | -835 |
Matrix_113 | ABI5 | Not available | Upstream | -789 |
| | | Upstream | -790 |
| | | Upstream | -791 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -786 |
| | | Upstream | -787 |
Matrix_120 | BEE2 | Not available | Upstream | -790 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -789 |
| | | Upstream | -790 |
Matrix_129 | ABF1 | Not available | Upstream | -790 |
Matrix_134 | ABF1 | Not available | Upstream | -790 |
| | | Upstream | -791 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -790 |
| | | Upstream | -791 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -790 |
| | | Upstream | -791 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -786 |
Matrix_156 | POC1 | Not available | Upstream | -789 |
| | | Upstream | -790 |
| | | Upstream | -791 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -790 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -790 |
| | | Upstream | -791 |
| | | Upstream | -832 |
| | | Upstream | -833 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -787 |
Matrix_196 | TCP20;AT5G41030 | Not available | Upstream | -272 |
| | | Upstream | -301 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -790 |
Matrix_214 | AP1 | Not available | Upstream | -788 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -787 |
| | | Upstream | -790 |
| | | Upstream | -791 |
| | | Upstream | -832 |
| | | Upstream | -833 |
Matrix_232 | TCP23 | Not available | Upstream | -273 |
| | | Upstream | -275 |
| | | Upstream | -276 |
| | | Upstream | -328 |
Matrix_233 | MYC3 | Not available | Upstream | -790 |
| | | Upstream | -791 |
Matrix_24 | POC1 | Not available | Upstream | -786 |
Matrix_247 | PIF3 | Not available | Upstream | -790 |
Matrix_25 | AP3 | Not available | Upstream | -196 |
Matrix_259 | AT1G50680;AT1G51120 | Not available | Upstream | -790 |
Matrix_264 | ATAREB1 | Not available | Upstream | -787 |
| | | Upstream | -790 |
Matrix_278 | AtbZIP44 | Not available | Upstream | -835 |
Matrix_280 | TCP24;TCP1;BRC2;ATTCP18 | Not available | Upstream | -273 |
Matrix_285 | DDF1 | Not available | Upstream | -796 |
| | | Upstream | -797 |
Matrix_292 | FTQ4 | Not available | Upstream | -797 |
| | | Upstream | -798 |
Matrix_294 | MEE35 | Not available | Upstream | -329 |
Matrix_296 | GBF2 | Not available | Upstream | -790 |
| | | Upstream | -791 |
| | | Upstream | -835 |
| | | Upstream | -836 |
Matrix_297 | TCP15 | Not available | Upstream | -273 |
| | | Upstream | -275 |
| | | Upstream | -276 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -790 |
| | | Upstream | -791 |
| | | Upstream | -835 |
| | | Upstream | -836 |
Matrix_301 | PIL5 | Not available | Upstream | -790 |
| | | Upstream | -791 |
Matrix_305 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -788 |
Matrix_312 | ARF11;MP;ARF6;IAA21;ARF8;ARF4 | Not available | Upstream | -797 |
Matrix_331 | GBF1 | Not available | Upstream | -789 |
| | | Upstream | -790 |
| | | Upstream | -791 |
| | | Upstream | -834 |
| | | Upstream | -835 |
Matrix_332 | SPT;ALC | Not available | Upstream | -790 |
| | | Upstream | -791 |
Matrix_338 | AP2 | Not available | Upstream | -787 |
Matrix_345 | POC1 | Not available | Upstream | -266 |
| | | Upstream | -786 |
| | | Upstream | -787 |
Matrix_348 | AT5G51910 | Not available | Upstream | -274 |
| | | Upstream | -275 |
Matrix_356 | PRR5 | Not available | Upstream | -783 |
| | | Upstream | -787 |
| | | Upstream | -833 |
Matrix_359 | FLC | Not available | Upstream | -788 |
Matrix_369 | AT2G18300 | Not available | Upstream | -790 |
Matrix_389 | ILR3 | Not available | Upstream | -790 |
Matrix_403 | BZR1 | Not available | Upstream | -788 |
Matrix_42 | AT2G45680 | Not available | Upstream | -274 |
| | | Upstream | -275 |
Matrix_435 | ATHB51 | Not available | Downstream | 3096 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -790 |
| | | Upstream | -836 |
Matrix_443 | AGL15 | Not available | Upstream | -788 |
Matrix_480 | BES1 | Not available | Upstream | -790 |
Matrix_488 | ABF1 | Not available | Upstream | -789 |
| | | Upstream | -828 |
Matrix_507 | TCP3 | Not available | Upstream | -273 |
| | | Upstream | -328 |
Matrix_515 | ddf2;ATCBF3;CBF1;CBF4 | Not available | Upstream | -796 |
| | | Upstream | -797 |
Matrix_53 | MYC3 | Not available | Upstream | -791 |
| | | Upstream | -792 |
Matrix_55 | PIF3 | Not available | Upstream | -789 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -790 |
| | | Upstream | -791 |
| | | Upstream | -837 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -790 |
| | | Upstream | -791 |
Matrix_61 | ATCBF3 | Not available | Upstream | -795 |
| | | Upstream | -796 |
Matrix_64 | PIF5 | Not available | Upstream | -790 |
| | | Upstream | -791 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -790 |
| | | Upstream | -791 |
Matrix_7 | PIF4 | Not available | Upstream | -791 |
| | | Upstream | -792 |
Matrix_77 | PRR5 | Not available | Upstream | -789 |
Matrix_80 | BIM1 | Not available | Upstream | -790 |
| | | Upstream | -791 |
Matrix_82 | TCP17 | Not available | Upstream | -329 |
Matrix_94 | TCP5 | Not available | Upstream | -329 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -791 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -791 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -790 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -256 |
| | | Upstream | -790 |
| | | Upstream | -791 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -789 |
| | | Upstream | -791 |
| | | Upstream | -835 |
Motif_277 | ATHB1 binding site motif | Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities | Downstream | 3095 |
Motif_279 | POLASIG3 | Plant polyA signal; Consensus sequence for plant polyadenylation signal | Downstream | 3094 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -791 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -791 |
| | | Upstream | -837 |
Motif_352 | ATHB5 binding site motif | Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro | Downstream | 3095 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Intron | 1498 |
Motif_368 | CBF1 BS in cor15a | Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs | Upstream | -795 |
Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | Upstream | -797 |
| | | Upstream | -811 |
Motif_388 | CPRFPCCHS;AtbZIP1 | BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding | Upstream | -790 |
Motif_391 | REALPHALGLHCB21 | REalpha found in Lemna gibba Lhcb21 gene promoter; Located at -134 to -129; Binding site of proteins of whole-cell extracts; The DNA binding activity is high in etiolated plants but much lower in green plants; Required for phytochrome regulation | Downstream | 3098 |
Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | Upstream | -836 |
Motif_440 | TGA1 binding site motif | Hex motif; Binding site of Arabidopsis bZIP protein TGA1 and G box binding factor GBF1; TGA1 and members of the GBF family differ in their DNA binding properties; G-Box-like element;TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | Upstream | -836 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -790 |
| | | Upstream | -791 |
Motif_453 | HEXMOTIFTAH3H4 | hexamer motif found in promoter of wheat histone genes H3 and H4; CaMV35S; NOS; Binding with HBP-1A and HBP-1B; Binding site of wheat nuclear protein HBP-1 (histone DNA binding protein-1); HBP-1 has a leucine zipper motif; hexamer motif in type 1 element may play important roles in regulation of replication- dependent but not of replication-independent expression of the wheat histone H3 gene;Rice OBF1-homodimer-binding site | Upstream | -838 |
Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | Upstream | -797 |
| | | Upstream | -811 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -790 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -792 |
| | | Upstream | -835 |
Motif_57 | ABREOSRAB21 | ABA responsive element (ABRE) of wheat Em and rice rab21 genes; Proposed consensus sequence for the repeated motif (Em1a and Em1b) of wheat Em gene | Upstream | -792 |
Motif_576 | TGACGTVMAMY | TGACGT motif found in the Vigna mungo alpha-Amylase (Amy) gene promoter; Located between -128 and -123; Required for high level expression of alpha-Amylase in the cotyledons of the germinated seeds | Upstream | -838 |
Motif_591 | CBFHV | Binding site of barley CBF1, and also of barley CBF2; CBF = C-repeat (CRT) binding factors; CBFs are also known as dehydration-responsive element (DRE) binding proteins (DREBs) | Upstream | -797 |
| | | Upstream | -811 |
Motif_599 | LREBOXIIPCCHS1;HY5 | BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression | Upstream | -789 |
Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | Upstream | -108 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -792 |
| | | Upstream | -835 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -791 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -834 |
Motif_652 | AUXRETGA2GMGH3 | TGA-box #2 in putative auxin-resonsive element (AUXRE) E1 of soybean GH3 promoter; Strong binding site for proteins in plant nuclear extracts; Hex-like element; E1 element=-249 to -203; E2 element=-241 to -224 | Upstream | -835 |