Matrix_104 | PI | Not available | Upstream | -150 |
| | | Upstream | -151 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -150 |
| | | Upstream | -151 |
Matrix_109 | GBF3 | Not available | Upstream | -150 |
| | | Upstream | -151 |
| | | Upstream | -152 |
| | | Upstream | -153 |
Matrix_113 | ABI5 | Not available | Upstream | -150 |
| | | Upstream | -151 |
| | | Upstream | -152 |
| | | Upstream | -153 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -98 |
| | | Upstream | -147 |
| | | Upstream | -148 |
| | | Upstream | -149 |
| | | Upstream | -214 |
Matrix_120 | BEE2 | Not available | Upstream | -151 |
Matrix_122 | ABF1;AREB2 | Not available | Upstream | -150 |
| | | Upstream | -151 |
| | | Upstream | -152 |
Matrix_129 | ABF1 | Not available | Upstream | -151 |
| | | Upstream | -152 |
Matrix_134 | ABF1 | Not available | Upstream | -151 |
| | | Upstream | -152 |
| | | Upstream | -153 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -151 |
| | | Upstream | -152 |
| | | Upstream | -153 |
Matrix_145 | GBF4;AT5G44080 | Not available | Upstream | -152 |
| | | Upstream | -153 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -157 |
| | | Upstream | -158 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -147 |
| | | Upstream | -148 |
Matrix_156 | POC1 | Not available | Upstream | -150 |
| | | Upstream | -151 |
| | | Upstream | -152 |
| | | Upstream | -153 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -151 |
| | | Upstream | -152 |
Matrix_162 | AtPHR1 | Not available | Upstream | -10 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -15 |
Matrix_192 | FHY3/FAR1 | Not available | Upstream | -148 |
| | | Upstream | -149 |
| | | Upstream | -152 |
| | | Upstream | -153 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -148 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -151 |
Matrix_206 | CUC1;ANAC100 | Not available | Upstream | -179 |
Matrix_209 | RAP2.6 | Not available | Upstream | -155 |
Matrix_210 | ARR1 | Not available | Upstream | -10 |
Matrix_214 | AP1 | Not available | Upstream | -149 |
| | | Upstream | -150 |
Matrix_217 | BES1 | A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana | Upstream | -148 |
| | | Upstream | -149 |
| | | Upstream | -152 |
| | | Upstream | -153 |
| | | Upstream | -215 |
Matrix_224 | ERF1 | Not available | Upstream | -156 |
| | | Upstream | -157 |
Matrix_233 | MYC3 | Not available | Upstream | -152 |
| | | Upstream | -153 |
Matrix_24 | POC1 | Not available | Upstream | -147 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -158 |
| | | Upstream | -159 |
Matrix_247 | PIF3 | Not available | Upstream | -101 |
| | | Upstream | -151 |
| | | Upstream | -152 |
Matrix_257 | NAC050;ANAC051;anac057;NAC2 | Not available | Upstream | -177 |
Matrix_259 | AT1G50680;AT1G51120 | Not available | Upstream | -151 |
Matrix_264 | ATAREB1 | Not available | Upstream | -148 |
| | | Upstream | -149 |
| | | Upstream | -151 |
| | | Upstream | -152 |
Matrix_277 | RAP2.6 | Not available | Upstream | -156 |
Matrix_287 | ERF2 | Not available | Upstream | -157 |
| | | Upstream | -158 |
Matrix_295 | ERF1 | Not available | Upstream | -157 |
Matrix_296 | GBF2 | Not available | Upstream | -151 |
| | | Upstream | -152 |
| | | Upstream | -153 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -151 |
| | | Upstream | -152 |
| | | Upstream | -153 |
Matrix_301 | PIL5 | Not available | Upstream | -146 |
| | | Upstream | -147 |
| | | Upstream | -152 |
| | | Upstream | -153 |
Matrix_323 | BIM3 | Not available | Upstream | -151 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -156 |
Matrix_330 | MYC2;TT8 | Not available | Upstream | -151 |
Matrix_331 | GBF1 | Not available | Upstream | -150 |
| | | Upstream | -151 |
| | | Upstream | -152 |
| | | Upstream | -153 |
Matrix_332 | SPT;ALC | Not available | Upstream | -151 |
| | | Upstream | -152 |
| | | Upstream | -153 |
Matrix_333 | GATA3 | Not available | Upstream | -8 |
Matrix_334 | AT3G23230 | Not available | Upstream | -158 |
| | | Upstream | -159 |
Matrix_338 | AP2 | Not available | Upstream | -148 |
Matrix_339 | bHLH104 | Not available | Upstream | -151 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -157 |
Matrix_345 | POC1 | Not available | Upstream | -98 |
| | | Upstream | -147 |
| | | Upstream | -148 |
| | | Upstream | -149 |
| | | Upstream | -214 |
Matrix_356 | PRR5 | Not available | Upstream | -144 |
| | | Upstream | -145 |
| | | Upstream | -148 |
| | | Upstream | -149 |
Matrix_360 | ORA59 | Not available | Upstream | -157 |
Matrix_369 | AT2G18300 | Not available | Upstream | -151 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -157 |
| | | Upstream | -158 |
Matrix_389 | ILR3 | Not available | Upstream | -151 |
Matrix_4 | ARR14 | Not available | Upstream | -10 |
Matrix_403 | BZR1 | Not available | Upstream | -149 |
| | | Upstream | -150 |
Matrix_406 | ATERF-7 | Not available | Upstream | -155 |
Matrix_41 | anac058 | Not available | Upstream | -179 |
Matrix_420 | ANAC58 | Not available | Upstream | -178 |
Matrix_438 | AtbZIP63 | Not available | Upstream | -151 |
Matrix_443 | AGL15 | Not available | Upstream | -149 |
| | | Upstream | -150 |
Matrix_449 | BIM2 | Not available | Upstream | -151 |
Matrix_462 | ATERF-8 | Not available | Upstream | -155 |
Matrix_465 | MYC4 | Not available | Upstream | -151 |
Matrix_480 | BES1 | Not available | Upstream | -151 |
| | | Upstream | -152 |
Matrix_484 | ATERF13 | Not available | Upstream | -157 |
Matrix_488 | ABF1 | Not available | Upstream | -143 |
| | | Upstream | -144 |
| | | Upstream | -150 |
| | | Upstream | -151 |
| | | Upstream | -210 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -156 |
| | | Upstream | -157 |
Matrix_53 | MYC3 | Not available | Upstream | -153 |
Matrix_55 | PIF3 | Not available | Upstream | -150 |
| | | Upstream | -151 |
Matrix_56 | BZIP17;BZIP28;BZIP49 | Not available | Upstream | -152 |
Matrix_60 | AT1G01260;AT5G57150 | Not available | Upstream | -152 |
| | | Upstream | -153 |
Matrix_63 | ARR10 | Not available | Upstream | -11 |
Matrix_64 | PIF5 | Not available | Upstream | -152 |
| | | Upstream | -153 |
Matrix_65 | POC1;PIL1 | Not available | Upstream | -152 |
| | | Upstream | -153 |
Matrix_69 | AT2G03500 | Not available | Upstream | -10 |
Matrix_7 | PIF4 | Not available | Upstream | -151 |
| | | Upstream | -153 |
Matrix_77 | PRR5 | Not available | Upstream | -149 |
| | | Upstream | -150 |
Matrix_80 | BIM1 | Not available | Upstream | -150 |
| | | Upstream | -152 |
Motif_141 | BP5OSWX | OsBP-5 (a MYC protein) binding site in Wx promoter | Upstream | -101 |
Motif_179 | CACGTGMOTIF;BES1;PIF4;PIF5 | Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -153 |
Motif_182 | MYB2CONSENSUSAT | MYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22 | Upstream | -539 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Upstream | -1995 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -153 |
Motif_200 | GBOXLERBCS | G box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBF | Upstream | -151 |
| | | Upstream | -152 |
Motif_218 | ABRERATCAL | ABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABRE | Upstream | -102 |
| | | Upstream | -152 |
| | | Upstream | -153 |
| | | Upstream | -218 |
Motif_222 | AGMOTIFNTMYB2 | AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is a regulator of the tobacco retrotransposon Tto1 and the defence-related gene phenylalanine ammonia lyase (PAL), which are induced by various stress such as wounding or elicitor treatment; AGP1 (GATA-type zinc finger protein) binding site | Upstream | -170 |
Motif_223 | LTRE1HVBLT49 | LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGAC | Upstream | -67 |
Motif_244 | ABRE-like binding site motif | Not available | Upstream | -140 |
| | | Upstream | -151 |
| | | Upstream | -153 |
Motif_291 | ABFs binding site motif | Binding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response element | Upstream | -151 |
| | | Upstream | -153 |
Motif_300 | ACGTROOT1;HY5 | Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA | Upstream | -151 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Upstream | -723 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -158 |
Motif_336 | MYBMOUSE | Binding site for mouse c-myb protein | Upstream | -539 |
Motif_339 | ABRE-like binding site motif | Molecular responses to dehydration and low temperature | Upstream | -140 |
| | | Upstream | -153 |
| | | Upstream | -1231 |
Motif_342 | POLASIG1 | PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in Arabidopsis | Upstream | -166 |
Motif_448 | IRO2OS | OsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiency | Upstream | -152 |
| | | Upstream | -153 |
Motif_473 | ABREOSRGA1 | ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxia | Upstream | -152 |
Motif_503 | EECCRCAH1 | EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1 | Upstream | -146 |
Motif_516 | BZIP12;ABI5 | The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis | Upstream | -137 |
Motif_558 | BOXIIPCCHS | Core of Box II/G box found in the parsley chs genes; Essential for light regulation | Upstream | -151 |
| | | Upstream | -154 |
| | | Upstream | -217 |
Motif_563 | PYRIMIDINEBOXOSRAMY1A | Pyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this site | Upstream | -163 |
Motif_567 | T/GBOXATPIN2 | T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motif | Upstream | -102 |
| | | Upstream | -219 |
Motif_627 | ACGTABREMOTIFA2OSEM | Experimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in Arabidopsis | Upstream | -151 |
| | | Upstream | -154 |
| | | Upstream | -217 |
Motif_638 | ABRE binding site motif | Not available | Upstream | -151 |
| | | Upstream | -153 |
Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | Upstream | -150 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -53 |
| | | Upstream | -724 |
Motif_79 | UPRMOTIFIIAT | Motif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc | Upstream | -155 |
Motif_88 | MYB2AT | Binding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in Arabidopsis | Upstream | -539 |