View conserved binding sites


Gene
GM02G02330
Description
galactose/UDP-glucose transporter 3
Alias
Glyma02g02330;Glyma02g02330.1;PAC:26288852;Glyma02g02330.1
Binding siteNameDescriptionLocationPosition
Matrix_104PINot availableUpstream-150
Upstream-151
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-150
Upstream-151
Matrix_109GBF3Not availableUpstream-150
Upstream-151
Upstream-152
Upstream-153
Matrix_113ABI5Not availableUpstream-150
Upstream-151
Upstream-152
Upstream-153
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-98
Upstream-147
Upstream-148
Upstream-149
Upstream-214
Matrix_120BEE2Not availableUpstream-151
Matrix_122ABF1;AREB2Not availableUpstream-150
Upstream-151
Upstream-152
Matrix_129ABF1Not availableUpstream-151
Upstream-152
Matrix_134ABF1Not availableUpstream-151
Upstream-152
Upstream-153
Matrix_14ZCW32;AT5G62610Not availableUpstream-151
Upstream-152
Upstream-153
Matrix_145GBF4;AT5G44080Not availableUpstream-152
Upstream-153
Matrix_147ERF3;AT1G80580Not availableUpstream-157
Upstream-158
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-147
Upstream-148
Matrix_156POC1Not availableUpstream-150
Upstream-151
Upstream-152
Upstream-153
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-151
Upstream-152
Matrix_162AtPHR1Not availableUpstream-10
Matrix_171LBD3;LBD4Not availableUpstream-15
Matrix_192FHY3/FAR1Not availableUpstream-148
Upstream-149
Upstream-152
Upstream-153
Matrix_194HYH;HY5Not availableUpstream-148
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-151
Matrix_206CUC1;ANAC100Not availableUpstream-179
Matrix_209RAP2.6Not availableUpstream-155
Matrix_210ARR1Not availableUpstream-10
Matrix_214AP1Not availableUpstream-149
Upstream-150
Matrix_217BES1A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thalianaUpstream-148
Upstream-149
Upstream-152
Upstream-153
Upstream-215
Matrix_224ERF1Not availableUpstream-156
Upstream-157
Matrix_233MYC3Not availableUpstream-152
Upstream-153
Matrix_24POC1Not availableUpstream-147
Matrix_243RAP2.12;RAP2.2Not availableUpstream-158
Upstream-159
Matrix_247PIF3Not availableUpstream-101
Upstream-151
Upstream-152
Matrix_257NAC050;ANAC051;anac057;NAC2Not availableUpstream-177
Matrix_259AT1G50680;AT1G51120Not availableUpstream-151
Matrix_264ATAREB1Not availableUpstream-148
Upstream-149
Upstream-151
Upstream-152
Matrix_277RAP2.6Not availableUpstream-156
Matrix_287ERF2Not availableUpstream-157
Upstream-158
Matrix_295ERF1Not availableUpstream-157
Matrix_296GBF2Not availableUpstream-151
Upstream-152
Upstream-153
Matrix_300bZIP68;bZIP16Not availableUpstream-151
Upstream-152
Upstream-153
Matrix_301PIL5Not availableUpstream-146
Upstream-147
Upstream-152
Upstream-153
Matrix_323BIM3Not availableUpstream-151
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-156
Matrix_330MYC2;TT8Not availableUpstream-151
Matrix_331GBF1Not availableUpstream-150
Upstream-151
Upstream-152
Upstream-153
Matrix_332SPT;ALCNot availableUpstream-151
Upstream-152
Upstream-153
Matrix_333GATA3Not availableUpstream-8
Matrix_334AT3G23230Not availableUpstream-158
Upstream-159
Matrix_338AP2Not availableUpstream-148
Matrix_339bHLH104Not availableUpstream-151
Matrix_344ATERF15;AT4G18450Not availableUpstream-157
Matrix_345POC1Not availableUpstream-98
Upstream-147
Upstream-148
Upstream-149
Upstream-214
Matrix_356PRR5Not availableUpstream-144
Upstream-145
Upstream-148
Upstream-149
Matrix_360ORA59Not availableUpstream-157
Matrix_369AT2G18300Not availableUpstream-151
Matrix_374AT5G07580;AT5G61590Not availableUpstream-157
Upstream-158
Matrix_389ILR3Not availableUpstream-151
Matrix_4ARR14Not availableUpstream-10
Matrix_403BZR1Not availableUpstream-149
Upstream-150
Matrix_406ATERF-7Not availableUpstream-155
Matrix_41anac058Not availableUpstream-179
Matrix_420ANAC58Not availableUpstream-178
Matrix_438AtbZIP63Not availableUpstream-151
Matrix_443AGL15Not availableUpstream-149
Upstream-150
Matrix_449BIM2Not availableUpstream-151
Matrix_462ATERF-8Not availableUpstream-155
Matrix_465MYC4Not availableUpstream-151
Matrix_480BES1Not availableUpstream-151
Upstream-152
Matrix_484ATERF13Not availableUpstream-157
Matrix_488ABF1Not availableUpstream-143
Upstream-144
Upstream-150
Upstream-151
Upstream-210
Matrix_50ATERF14;AT5G43410Not availableUpstream-156
Upstream-157
Matrix_53MYC3Not availableUpstream-153
Matrix_55PIF3Not availableUpstream-150
Upstream-151
Matrix_56BZIP17;BZIP28;BZIP49Not availableUpstream-152
Matrix_60AT1G01260;AT5G57150Not availableUpstream-152
Upstream-153
Matrix_63ARR10Not availableUpstream-11
Matrix_64PIF5Not availableUpstream-152
Upstream-153
Matrix_65POC1;PIL1Not availableUpstream-152
Upstream-153
Matrix_69AT2G03500Not availableUpstream-10
Matrix_7PIF4Not availableUpstream-151
Upstream-153
Matrix_77PRR5Not availableUpstream-149
Upstream-150
Matrix_80BIM1Not availableUpstream-150
Upstream-152
Motif_141BP5OSWXOsBP-5 (a MYC protein) binding site in Wx promoterUpstream-101
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-153
Motif_182MYB2CONSENSUSATMYB recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; see MYB2 and MYBATRD22Upstream-539
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisUpstream-1995
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-153
Motif_200GBOXLERBCSG box; Conserved sequence upstream of light-regulated genes; Sequence found in the promoter region of rbcS of tomato and Arabidopsis; Binding with GBFUpstream-151
Upstream-152
Motif_218ABRERATCALABRE-related sequence or Repeated sequence motifs identified in the upstream regions of 162 Ca(2+)-responsive upregulated genes; see also ABREUpstream-102
Upstream-152
Upstream-153
Upstream-218
Motif_222AGMOTIFNTMYB2AG-motif found at -114 of the promoter of NtMyb2 gene; NtMyb2 is a regulator of the tobacco retrotransposon Tto1 and the defence-related gene phenylalanine ammonia lyase (PAL), which are induced by various stress such as wounding or elicitor treatment; AGP1 (GATA-type zinc finger protein) binding siteUpstream-170
Motif_223LTRE1HVBLT49LTRE-1 (low-temperature-responsive element) in barley (H.v.) blt4.9 gene promoter; A new LTRE; A previously known LTRE is CCGACUpstream-67
Motif_244ABRE-like binding site motifNot availableUpstream-140
Upstream-151
Upstream-153
Motif_291ABFs binding site motifBinding site of trans-acting factor EMBP-1; wheat Em gene;Binding site of ABFs; ABFs (ABRE binding factors) were isolated from Arabidopsis by a yeast one-hybrid screening system; Expression ABFs is induced by ABA and various stress treatment; ABFs belongs to a distinct subfamily of bZIP proteins; Involved in ABA-mediated stress-signaling pathway;A plant leucine zipper protein that recognizes an abscisic acid response elementUpstream-151
Upstream-153
Motif_300ACGTROOT1;HY5Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABAUpstream-151
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsUpstream-723
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-158
Motif_336MYBMOUSEBinding site for mouse c-myb proteinUpstream-539
Motif_339ABRE-like binding site motifMolecular responses to dehydration and low temperatureUpstream-140
Upstream-153
Upstream-1231
Motif_342POLASIG1PolyA signal; poly A signal found in legA gene of pea, rice alpha-amylase; -10 to -30 in the case of animal genes. Near upstream elements (NUE) in ArabidopsisUpstream-166
Motif_448IRO2OSOsIRO2-binding core sequence; G-box plus G; Transcription factor OsIRO2 is induced exclusively by Fe deficiencyUpstream-152
Upstream-153
Motif_473ABREOSRGA1ABRE (ABA responsive element) in rice RGA1 encoding a G protein alpha subunit;ABRE; ABA and water-stress responses; Found in maize rab28; maize rab28 is ABA-inducible in embryos and vegetative tissues; Found in the Arabidopsis (A.t.) alcohol dehydrogenase (Adh) gene promoter; ABRE2; Found in the maize (Z.m.) Cat1 gene promoter; Responsible for the induction by ABA; Binding site of CBF2; Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance; The CBF genes do not appear to be autoregulated through the CRT/DRE sequence;The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Characterization of a maize G-box binding factor that is induced by hypoxiaUpstream-152
Motif_503EECCRCAH1EEC; Consensus motif of the two enhancer elements, EE-1 and EE-2, both found in the promoter region of the Chlamydomonas Cah1 (encoding a periplasmic carbonic anhydrase); Binding site of Myb transcription factor LCR1Upstream-146
Motif_516BZIP12;ABI5The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesisUpstream-137
Motif_558BOXIIPCCHSCore of Box II/G box found in the parsley chs genes; Essential for light regulationUpstream-151
Upstream-154
Upstream-217
Motif_563PYRIMIDINEBOXOSRAMY1APyrimidine box found in rice alpha-amylase (RAmy1A) gene; Gibberellin-respons cis-element of GARE and pyrimidine box are partially involved in sugar repression; Found in the promoter of barley alpha-amylase (Amy2/32b) gene which is induced in the aleurone layers in response to GA; BPBF protein binds specifically to this siteUpstream-163
Motif_567T/GBOXATPIN2T/G-box found in tomato proteinase inhibitor II (pin2) and leucine aminopeptidase (LAP) genes; Involved in jasmonate (JA) induction of these genes; bHLH-Leu zipper JAMYC2 and JAMYC10 proteins specifically recognize this motifUpstream-102
Upstream-219
Motif_627ACGTABREMOTIFA2OSEMExperimentally determined sequence requirement of ACGT-core of motif A in ABRE of the rice gene, OSEM; DRE and ABRE are interdependent in the ABA-responsive expression of the rd29A in ArabidopsisUpstream-151
Upstream-154
Upstream-217
Motif_638ABRE binding site motifNot availableUpstream-151
Upstream-153
Motif_641LRENPCABELRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241Upstream-150
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-53
Upstream-724
Motif_79UPRMOTIFIIATMotif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etcUpstream-155
Motif_88MYB2ATBinding site for ATMYB2, an Arabidopsis MYB homolog; ATMYB2 binds oligonucleotides that contained a consensus MYB recognition sequence (TAACTG), such as is in the SV40 enhancer and the maize bronze-1 promoter; ATMYB2 is involved in regulation of genes that are responsive to water stress in ArabidopsisUpstream-539