Matrix_101 | ERF5 | Not available | Upstream | -1103 |
| | | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
| | | Upstream | -1122 |
Matrix_108 | PIF4 | Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses | Upstream | -530 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -1115 |
| | | Upstream | -1118 |
Matrix_118 | PIF3_2 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -528 |
| | | Upstream | -1136 |
Matrix_119 | RRTF1 | Not available | Upstream | -1114 |
| | | Upstream | -1116 |
| | | Upstream | -1117 |
| | | Upstream | -1119 |
| | | Upstream | -1120 |
Matrix_120 | BEE2 | Not available | Upstream | -531 |
Matrix_138 | RRTF1 | Not available | Upstream | -1114 |
| | | Upstream | -1116 |
| | | Upstream | -1117 |
| | | Upstream | -1119 |
| | | Upstream | -1120 |
Matrix_14 | ZCW32;AT5G62610 | Not available | Upstream | -532 |
Matrix_146 | ORA47 | Not available | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -982 |
| | | Upstream | -1103 |
| | | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
| | | Upstream | -1123 |
| | | Upstream | -1124 |
Matrix_15 | PIF3_1 | Direct targeting of light signals to a promoter element-bound transcription factor | Upstream | -527 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -1115 |
| | | Upstream | -1118 |
| | | Upstream | -1121 |
Matrix_156 | POC1 | Not available | Upstream | -530 |
Matrix_158 | AT1G03040;LRL1;UNE12;LRL2;LRL3 | Not available | Upstream | -531 |
Matrix_16 | AT3G04450;PHL1 | Not available | Upstream | -1131 |
Matrix_162 | AtPHR1 | Not available | Upstream | -1131 |
Matrix_179 | AtMYB84;MYB36;MYB68;O49746_ARATH | Not available | Intron | 7145 |
Matrix_190 | ATERF1 | Not available | Upstream | -1113 |
| | | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1116 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1119 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
| | | Upstream | -1122 |
Matrix_194 | HYH;HY5 | Not available | Upstream | -528 |
| | | Upstream | -1135 |
| | | Upstream | -1136 |
Matrix_200 | PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815 | Not available | Upstream | -531 |
Matrix_224 | ERF1 | Not available | Upstream | -1116 |
| | | Upstream | -1119 |
| | | Upstream | -1122 |
Matrix_234 | RAP2.3 | Not available | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1116 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1119 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
Matrix_24 | POC1 | Not available | Upstream | -527 |
| | | Upstream | -1135 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -1115 |
| | | Upstream | -1116 |
| | | Upstream | -1118 |
| | | Upstream | -1119 |
| | | Upstream | -1121 |
| | | Upstream | -1122 |
| | | Upstream | -1124 |
| | | Upstream | -1125 |
Matrix_247 | PIF3 | Not available | Upstream | -1138 |
| | | Upstream | -1139 |
Matrix_252 | RAP2.6 | Not available | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1116 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1119 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
Matrix_261 | ATERF-1 | Not available | Upstream | -1103 |
| | | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
Matrix_264 | ATAREB1 | Not available | Upstream | -528 |
Matrix_272 | DEAR4 | Not available | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
Matrix_287 | ERF2 | Not available | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
| | | Upstream | -1123 |
| | | Upstream | -1124 |
Matrix_288 | RAP2.3 | Not available | Upstream | -1114 |
| | | Upstream | -1116 |
| | | Upstream | -1117 |
| | | Upstream | -1119 |
| | | Upstream | -1120 |
Matrix_295 | ERF1 | Not available | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
| | | Upstream | -1123 |
| | | Upstream | -1124 |
Matrix_296 | GBF2 | Not available | Upstream | -1138 |
| | | Upstream | -1139 |
| | | Upstream | -1140 |
Matrix_300 | bZIP68;bZIP16 | Not available | Upstream | -1138 |
| | | Upstream | -1139 |
Matrix_317 | AT1G06070;AT2G31370;AT2G40620 | Not available | Upstream | -1137 |
Matrix_321 | HRD | Not available | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -1102 |
| | | Upstream | -1114 |
| | | Upstream | -1116 |
| | | Upstream | -1117 |
| | | Upstream | -1119 |
| | | Upstream | -1120 |
Matrix_334 | AT3G23230 | Not available | Upstream | -1115 |
| | | Upstream | -1116 |
| | | Upstream | -1118 |
| | | Upstream | -1119 |
| | | Upstream | -1121 |
| | | Upstream | -1122 |
Matrix_338 | AP2 | Not available | Upstream | -528 |
Matrix_34 | RAV1_2 | RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -1136 |
Matrix_343 | AT2G33710 | Not available | Upstream | -1103 |
| | | Upstream | -1112 |
| | | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -1117 |
| | | Upstream | -1120 |
| | | Upstream | -1123 |
Matrix_345 | POC1 | Not available | Upstream | -528 |
| | | Upstream | -1136 |
Matrix_352 | LEC2 | Not available | Intron | 10935 |
| | | Intron | 3987 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -1102 |
| | | Upstream | -1114 |
| | | Upstream | -1116 |
| | | Upstream | -1117 |
| | | Upstream | -1119 |
| | | Upstream | -1120 |
Matrix_356 | PRR5 | Not available | Upstream | -524 |
| | | Upstream | -528 |
Matrix_360 | ORA59 | Not available | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
| | | Upstream | -1123 |
| | | Upstream | -1124 |
Matrix_363 | RAP2.3 | Not available | Upstream | -1114 |
| | | Upstream | -1116 |
| | | Upstream | -1117 |
| | | Upstream | -1119 |
| | | Upstream | -1120 |
Matrix_369 | AT2G18300 | Not available | Upstream | -529 |
| | | Upstream | -531 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1116 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1119 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
| | | Upstream | -1123 |
| | | Upstream | -1124 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -1106 |
| | | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
Matrix_378 | ATERF1 | Not available | Upstream | -1112 |
| | | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
Matrix_389 | ILR3 | Not available | Upstream | -531 |
Matrix_403 | BZR1 | Not available | Upstream | -529 |
Matrix_405 | DREB2C | Not available | Upstream | -1115 |
| | | Upstream | -1116 |
| | | Upstream | -1118 |
| | | Upstream | -1119 |
| | | Upstream | -1121 |
| | | Upstream | -1122 |
Matrix_406 | ATERF-7 | Not available | Upstream | -1101 |
| | | Upstream | -1113 |
| | | Upstream | -1115 |
| | | Upstream | -1116 |
| | | Upstream | -1118 |
| | | Upstream | -1119 |
| | | Upstream | -1121 |
| | | Upstream | -1122 |
Matrix_409 | DEAR3 | Not available | Upstream | -1102 |
| | | Upstream | -1105 |
| | | Upstream | -1114 |
| | | Upstream | -1116 |
| | | Upstream | -1117 |
| | | Upstream | -1119 |
| | | Upstream | -1120 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -1115 |
| | | Upstream | -1116 |
| | | Upstream | -1118 |
| | | Upstream | -1119 |
| | | Upstream | -1121 |
| | | Upstream | -1122 |
Matrix_448 | ATERF6 | Not available | Upstream | -1116 |
| | | Upstream | -1119 |
Matrix_45 | DRN | Not available | Upstream | -1103 |
| | | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
| | | Upstream | -1123 |
| | | Upstream | -1124 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -1116 |
| | | Upstream | -1119 |
Matrix_462 | ATERF-8 | Not available | Upstream | -1101 |
| | | Upstream | -1113 |
| | | Upstream | -1115 |
| | | Upstream | -1116 |
| | | Upstream | -1118 |
| | | Upstream | -1119 |
| | | Upstream | -1121 |
| | | Upstream | -1122 |
Matrix_467 | RAV1 | Not available | Upstream | -1136 |
Matrix_473 | RRTF1 | Not available | Upstream | -1112 |
| | | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
Matrix_477 | RAV1 | Not available | Upstream | -1136 |
Matrix_484 | ATERF13 | Not available | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
| | | Upstream | -1123 |
| | | Upstream | -1124 |
Matrix_488 | ABF1 | Not available | Upstream | -1130 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -1103 |
| | | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
Matrix_497 | AP3 | Not available | Intron | 16977 |
| | | Intron | 8515 |
Matrix_5 | AT5G51190;ERF104 | Not available | Upstream | -1123 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -1116 |
| | | Upstream | -1119 |
| | | Upstream | -1122 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -1104 |
| | | Upstream | -1115 |
| | | Upstream | -1116 |
| | | Upstream | -1118 |
| | | Upstream | -1119 |
| | | Upstream | -1121 |
| | | Upstream | -1122 |
Matrix_517 | ERF12 | Not available | Upstream | -982 |
| | | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
Matrix_518 | AT2G21230 | Not available | Upstream | -1137 |
Matrix_53 | MYC3 | Not available | Upstream | -529 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -1102 |
| | | Upstream | -1105 |
| | | Upstream | -1114 |
| | | Upstream | -1116 |
| | | Upstream | -1117 |
| | | Upstream | -1119 |
| | | Upstream | -1120 |
Matrix_64 | PIF5 | Not available | Upstream | -532 |
Matrix_7 | PIF4 | Not available | Upstream | -531 |
Matrix_77 | PRR5 | Not available | Upstream | -529 |
Matrix_80 | BIM1 | Not available | Upstream | -530 |
| | | Upstream | -532 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -1115 |
| | | Upstream | -1116 |
| | | Upstream | -1118 |
| | | Upstream | -1119 |
| | | Upstream | -1121 |
| | | Upstream | -1122 |
Matrix_91 | CRF3 | Not available | Upstream | -1103 |
| | | Upstream | -1114 |
| | | Upstream | -1115 |
| | | Upstream | -1117 |
| | | Upstream | -1118 |
| | | Upstream | -1120 |
| | | Upstream | -1121 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -1140 |
Motif_309 | GATA promoter motif | Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics | Downstream | 19169 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -1115 |
| | | Upstream | -1118 |
| | | Upstream | -1121 |
| | | Upstream | -1124 |
Motif_384 | SITEIOSPCNA | Site I of rice PCNA (proliferating cell nuclear antigen) gene; Found at -201 to -194; Resemble G-box; May contribute in part to transcriptional activation | Upstream | -1139 |
Motif_404 | AACACOREOSGLUB1 | Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoter | Upstream | -370 |
| | | Upstream | -708 |
Motif_411 | PRECONSCRHSP70A | Consensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and light | Upstream | -817 |
| | | Upstream | -1014 |
Motif_484 | RAV1-B binding site motif | Binding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -1140 |
Motif_615 | MARTBOX | T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR) | Upstream | -1306 |
| | | Upstream | -1307 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 19168 |
| | | Downstream | 18853 |
| | | Downstream | 18852 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Downstream | 18852 |