View conserved binding sites


Gene
CM00022G03970
Description
CHD3-type chromatin-remodeling factor PICKLE
Alias
MELO3C014569;MELO3C014569T1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-1103
Upstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Upstream-1122
Matrix_108PIF4Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responsesUpstream-530
Matrix_110ATABI4;AT3G57600Not availableUpstream-1115
Upstream-1118
Matrix_118PIF3_2Direct targeting of light signals to a promoter element-bound transcription factorUpstream-528
Upstream-1136
Matrix_119RRTF1Not availableUpstream-1114
Upstream-1116
Upstream-1117
Upstream-1119
Upstream-1120
Matrix_120BEE2Not availableUpstream-531
Matrix_138RRTF1Not availableUpstream-1114
Upstream-1116
Upstream-1117
Upstream-1119
Upstream-1120
Matrix_14ZCW32;AT5G62610Not availableUpstream-532
Matrix_146ORA47Not availableUpstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Matrix_147ERF3;AT1G80580Not availableUpstream-982
Upstream-1103
Upstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Upstream-1123
Upstream-1124
Matrix_15PIF3_1Direct targeting of light signals to a promoter element-bound transcription factorUpstream-527
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-1115
Upstream-1118
Upstream-1121
Matrix_156POC1Not availableUpstream-530
Matrix_158AT1G03040;LRL1;UNE12;LRL2;LRL3Not availableUpstream-531
Matrix_16AT3G04450;PHL1Not availableUpstream-1131
Matrix_162AtPHR1Not availableUpstream-1131
Matrix_179AtMYB84;MYB36;MYB68;O49746_ARATHNot availableIntron7145
Matrix_190ATERF1Not availableUpstream-1113
Upstream-1114
Upstream-1115
Upstream-1116
Upstream-1117
Upstream-1118
Upstream-1119
Upstream-1120
Upstream-1121
Upstream-1122
Matrix_194HYH;HY5Not availableUpstream-528
Upstream-1135
Upstream-1136
Matrix_200PIL5;AT4G28790;AT4G28800;AT4G28811;AT4G28815Not availableUpstream-531
Matrix_224ERF1Not availableUpstream-1116
Upstream-1119
Upstream-1122
Matrix_234RAP2.3Not availableUpstream-1114
Upstream-1115
Upstream-1116
Upstream-1117
Upstream-1118
Upstream-1119
Upstream-1120
Upstream-1121
Matrix_24POC1Not availableUpstream-527
Upstream-1135
Matrix_243RAP2.12;RAP2.2Not availableUpstream-1115
Upstream-1116
Upstream-1118
Upstream-1119
Upstream-1121
Upstream-1122
Upstream-1124
Upstream-1125
Matrix_247PIF3Not availableUpstream-1138
Upstream-1139
Matrix_252RAP2.6Not availableUpstream-1114
Upstream-1115
Upstream-1116
Upstream-1117
Upstream-1118
Upstream-1119
Upstream-1120
Upstream-1121
Matrix_261ATERF-1Not availableUpstream-1103
Upstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Matrix_264ATAREB1Not availableUpstream-528
Matrix_272DEAR4Not availableUpstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Matrix_287ERF2Not availableUpstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Upstream-1123
Upstream-1124
Matrix_288RAP2.3Not availableUpstream-1114
Upstream-1116
Upstream-1117
Upstream-1119
Upstream-1120
Matrix_295ERF1Not availableUpstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Upstream-1123
Upstream-1124
Matrix_296GBF2Not availableUpstream-1138
Upstream-1139
Upstream-1140
Matrix_300bZIP68;bZIP16Not availableUpstream-1138
Upstream-1139
Matrix_317AT1G06070;AT2G31370;AT2G40620Not availableUpstream-1137
Matrix_321HRDNot availableUpstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-1102
Upstream-1114
Upstream-1116
Upstream-1117
Upstream-1119
Upstream-1120
Matrix_334AT3G23230Not availableUpstream-1115
Upstream-1116
Upstream-1118
Upstream-1119
Upstream-1121
Upstream-1122
Matrix_338AP2Not availableUpstream-528
Matrix_34RAV1_2RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-1136
Matrix_343AT2G33710Not availableUpstream-1103
Upstream-1112
Upstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Matrix_344ATERF15;AT4G18450Not availableUpstream-1117
Upstream-1120
Upstream-1123
Matrix_345POC1Not availableUpstream-528
Upstream-1136
Matrix_352LEC2Not availableIntron10935
Intron3987
Matrix_355ERF10;ERF11Not availableUpstream-1102
Upstream-1114
Upstream-1116
Upstream-1117
Upstream-1119
Upstream-1120
Matrix_356PRR5Not availableUpstream-524
Upstream-528
Matrix_360ORA59Not availableUpstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Upstream-1123
Upstream-1124
Matrix_363RAP2.3Not availableUpstream-1114
Upstream-1116
Upstream-1117
Upstream-1119
Upstream-1120
Matrix_369AT2G18300Not availableUpstream-529
Upstream-531
Matrix_374AT5G07580;AT5G61590Not availableUpstream-1114
Upstream-1115
Upstream-1116
Upstream-1117
Upstream-1118
Upstream-1119
Upstream-1120
Upstream-1121
Upstream-1123
Upstream-1124
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-1106
Upstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Matrix_378ATERF1Not availableUpstream-1112
Upstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Matrix_389ILR3Not availableUpstream-531
Matrix_403BZR1Not availableUpstream-529
Matrix_405DREB2CNot availableUpstream-1115
Upstream-1116
Upstream-1118
Upstream-1119
Upstream-1121
Upstream-1122
Matrix_406ATERF-7Not availableUpstream-1101
Upstream-1113
Upstream-1115
Upstream-1116
Upstream-1118
Upstream-1119
Upstream-1121
Upstream-1122
Matrix_409DEAR3Not availableUpstream-1102
Upstream-1105
Upstream-1114
Upstream-1116
Upstream-1117
Upstream-1119
Upstream-1120
Matrix_426CRF1;CRF2Not availableUpstream-1115
Upstream-1116
Upstream-1118
Upstream-1119
Upstream-1121
Upstream-1122
Matrix_448ATERF6Not availableUpstream-1116
Upstream-1119
Matrix_45DRNNot availableUpstream-1103
Upstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Upstream-1123
Upstream-1124
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-1116
Upstream-1119
Matrix_462ATERF-8Not availableUpstream-1101
Upstream-1113
Upstream-1115
Upstream-1116
Upstream-1118
Upstream-1119
Upstream-1121
Upstream-1122
Matrix_467RAV1Not availableUpstream-1136
Matrix_473RRTF1Not availableUpstream-1112
Upstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Matrix_477RAV1Not availableUpstream-1136
Matrix_484ATERF13Not availableUpstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Upstream-1123
Upstream-1124
Matrix_488ABF1Not availableUpstream-1130
Matrix_493AT1G22985;AT1G71130Not availableUpstream-1103
Upstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Matrix_497AP3Not availableIntron16977
Intron8515
Matrix_5AT5G51190;ERF104Not availableUpstream-1123
Matrix_50ATERF14;AT5G43410Not availableUpstream-1116
Upstream-1119
Upstream-1122
Matrix_506DRNL;ATERF-4Not availableUpstream-1104
Upstream-1115
Upstream-1116
Upstream-1118
Upstream-1119
Upstream-1121
Upstream-1122
Matrix_517ERF12Not availableUpstream-982
Upstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Matrix_518AT2G21230Not availableUpstream-1137
Matrix_53MYC3Not availableUpstream-529
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-1102
Upstream-1105
Upstream-1114
Upstream-1116
Upstream-1117
Upstream-1119
Upstream-1120
Matrix_64PIF5Not availableUpstream-532
Matrix_7PIF4Not availableUpstream-531
Matrix_77PRR5Not availableUpstream-529
Matrix_80BIM1Not availableUpstream-530
Upstream-532
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-1115
Upstream-1116
Upstream-1118
Upstream-1119
Upstream-1121
Upstream-1122
Matrix_91CRF3Not availableUpstream-1103
Upstream-1114
Upstream-1115
Upstream-1117
Upstream-1118
Upstream-1120
Upstream-1121
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-1140
Motif_309GATA promoter motifArabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristicsDownstream19169
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-1115
Upstream-1118
Upstream-1121
Upstream-1124
Motif_384SITEIOSPCNASite I of rice PCNA (proliferating cell nuclear antigen) gene; Found at -201 to -194; Resemble G-box; May contribute in part to transcriptional activationUpstream-1139
Motif_404AACACOREOSGLUB1Core of AACA motifs found in rice glutelin genes, involved in controlling the endosperm-specific expression; AACA is also closely associated with the GCN4 motif in all rice glutelin genes and together have been shown to confer endosperm-specific enhancement to the truncated -90 CaMV 35S promoterUpstream-370
Upstream-708
Motif_411PRECONSCRHSP70AConsensus sequence of PRE (plastid response element) in the promoters of HSP70A in Chlamydomonas; Involved in induction of HSP70A gene by both MgProto and lightUpstream-817
Upstream-1014
Motif_484RAV1-B binding site motifBinding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-1140
Motif_615MARTBOXT-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)Upstream-1306
Upstream-1307
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream19168
Downstream18853
Downstream18852
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionDownstream18852