Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchBinding site page : Motif_484
- Identifier
- Motif_484
- Name
- RAV1-B binding site motif
- Description
- Binding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants
- Number of genes
- 4282
- Sequence
- CACCTG
- Positional Weight Matrix
Binding site distribution per species
Binding site distribition per location
Toolbox
Explore
- ... associated Gene Ontology annotation of this binding site.
- ... associated InterPro annotation of this binding site.
- ... associated MapMan annotation of this binding site.
Associated Transcription Factors
| Transcription factor | Alias | Description | Orthologs | Associated motifs |
|---|---|---|---|---|
| AT1G68840 | related to ABI3/VP1 2 | RAV2;P82280 | View orthologs | View associated binding sites |
Gene List
Index of genes with 1 constraints:
- Binding site : Motif_484
Page 1 of 215, showing 20 records out of 4282 total, starting on record 1, ending on 20
| gene_id | species | strand | chr | type |
|---|---|---|---|---|
| GM01G02850 | gma | - | Gm01 | coding |
| GM01G04310 | gma | - | Gm01 | coding |
| GM01G33370 | gma | - | Gm01 | coding |
| GM01G38381 | gma | - | Gm01 | coding |
| GM01G45241 | gma | - | Gm01 | coding |
| GM02G03380 | gma | + | Gm02 | coding |
| GM02G04531 | gma | + | Gm02 | coding |
| GM02G10630 | gma | - | Gm02 | coding |
| GM02G35450 | gma | - | Gm02 | coding |
| GM02G36150 | gma | - | Gm02 | coding |
| GM02G37020 | gma | - | Gm02 | coding |
| GM02G41630 | gma | + | Gm02 | coding |
| GM02G41820 | gma | + | Gm02 | coding |
| GM02G41990 | gma | + | Gm02 | coding |
| GM02G43740 | gma | + | Gm02 | coding |
| GM02G45690 | gma | + | Gm02 | coding |
| GM02G48150 | gma | - | Gm02 | coding |
| GM03G01900 | gma | + | Gm03 | coding |
| GM03G03500 | gma | + | Gm03 | coding |
| GM03G28570 | gma | - | Gm03 | coding |