View conserved binding sites


Gene
BR10G15190
Description
Ran-binding protein 6
Alias
Bra002263;Bra002263
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-22
Upstream-19
Matrix_110ATABI4;AT3G57600Not availableUpstream-20
Upstream-17
Matrix_119RRTF1Not availableUpstream-21
Upstream-18
Matrix_138RRTF1Not availableUpstream-21
Upstream-18
Matrix_146ORA47Not availableUpstream-22
Upstream-19
Matrix_147ERF3;AT1G80580Not availableUpstream-20
Upstream-17
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-21
Upstream-18
Matrix_190ATERF1Not availableUpstream-20
Upstream-19
Upstream-17
Matrix_224ERF1Not availableUpstream-21
Upstream-18
Matrix_234RAP2.3Not availableUpstream-22
Upstream-19
Matrix_243RAP2.12;RAP2.2Not availableUpstream-21
Upstream-18
Matrix_252RAP2.6Not availableUpstream-22
Upstream-20
Upstream-19
Matrix_261ATERF-1Not availableUpstream-21
Upstream-18
Matrix_272DEAR4Not availableUpstream-22
Upstream-19
Matrix_277RAP2.6Not availableUpstream-18
Matrix_287ERF2Not availableUpstream-22
Upstream-19
Matrix_288RAP2.3Not availableUpstream-21
Upstream-18
Matrix_295ERF1Not availableUpstream-20
Upstream-17
Matrix_321HRDNot availableUpstream-21
Upstream-18
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-21
Upstream-18
Matrix_334AT3G23230Not availableUpstream-21
Upstream-18
Matrix_343AT2G33710Not availableUpstream-22
Upstream-19
Matrix_344ATERF15;AT4G18450Not availableUpstream-20
Matrix_355ERF10;ERF11Not availableUpstream-21
Upstream-18
Matrix_360ORA59Not availableUpstream-20
Upstream-17
Matrix_363RAP2.3Not availableUpstream-21
Upstream-18
Matrix_374AT5G07580;AT5G61590Not availableUpstream-21
Upstream-18
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-21
Upstream-18
Matrix_378ATERF1Not availableUpstream-22
Upstream-19
Matrix_394DREB_UNot availableUpstream-18
Matrix_405DREB2CNot availableUpstream-20
Matrix_406ATERF-7Not availableUpstream-20
Upstream-17
Matrix_409DEAR3Not availableUpstream-21
Upstream-18
Matrix_426CRF1;CRF2Not availableUpstream-21
Upstream-18
Matrix_448ATERF6Not availableUpstream-21
Matrix_45DRNNot availableUpstream-20
Upstream-17
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-21
Upstream-18
Matrix_462ATERF-8Not availableUpstream-20
Upstream-17
Matrix_473RRTF1Not availableUpstream-22
Upstream-19
Matrix_484ATERF13Not availableUpstream-20
Upstream-17
Matrix_493AT1G22985;AT1G71130Not availableUpstream-21
Upstream-18
Matrix_50ATERF14;AT5G43410Not availableUpstream-21
Upstream-18
Matrix_506DRNL;ATERF-4Not availableUpstream-21
Upstream-18
Matrix_517ERF12Not availableUpstream-20
Upstream-17
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-21
Upstream-18
Matrix_84AtGRF6Not availableUpstream-22
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-21
Upstream-18
Matrix_91CRF3Not availableUpstream-21
Upstream-18
Motif_129GAGAGMGSA1GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNAUpstream-101
Upstream-99
Upstream-97
Upstream-95
Upstream-93
Motif_194EBOXBNNAPAE-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1Upstream-11
Motif_226E2F1OSPCNAre2f-1 found in the promoter of rice PCNA gene; Located between -142 and -135; te2f-1 found in the promote of Tobacco PCBA gene; Located between -122 and -115; Binding site of OsE2F1 and OsE2F2; Involved in transcriptional activation in actively dividing cells and tissueUpstream-25
Motif_286SEBFCONSSTPR10ABinding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response elementUpstream-50
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-19
Upstream-16
Motif_365ARF1 binding site motifARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factorsUpstream-50
Motif_372E2FATE2F-binding site found in many potential E2F target genes; most potential E2F targets identified in silico show a cell cycle-regulated expressionUpstream-25
Motif_383UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-125
Motif_441GAGA8HVBKN3GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBRUpstream-101
Upstream-99
Upstream-97
Upstream-95
Upstream-93
Upstream-91
Motif_450E2FCONSENSUSE2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plantsUpstream-25
Motif_484RAV1-B binding site motifBinding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plantsUpstream-11
Motif_584UPRE-III(bZIP60)The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in ArabidopsisUpstream-125
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionUpstream-27
Upstream-26
Motif_663E2F binding site motif;E2F/DP BS in AtCDC6Not availableUpstream-25
Motif_682GT1GMSCAM4GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expressionUpstream-27
Motif_69CTRMCAMV35SCT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGAUpstream-101
Upstream-99
Upstream-97
Upstream-95
Upstream-93
Upstream-91
Upstream-89
Upstream-87
Upstream-85
Upstream-83