Matrix_101 | ERF5 | Not available | Upstream | -22 |
| | | Upstream | -19 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -20 |
| | | Upstream | -17 |
Matrix_119 | RRTF1 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_138 | RRTF1 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_146 | ORA47 | Not available | Upstream | -22 |
| | | Upstream | -19 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -20 |
| | | Upstream | -17 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_190 | ATERF1 | Not available | Upstream | -20 |
| | | Upstream | -19 |
| | | Upstream | -17 |
Matrix_224 | ERF1 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_234 | RAP2.3 | Not available | Upstream | -22 |
| | | Upstream | -19 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_252 | RAP2.6 | Not available | Upstream | -22 |
| | | Upstream | -20 |
| | | Upstream | -19 |
Matrix_261 | ATERF-1 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_272 | DEAR4 | Not available | Upstream | -22 |
| | | Upstream | -19 |
Matrix_277 | RAP2.6 | Not available | Upstream | -18 |
Matrix_287 | ERF2 | Not available | Upstream | -22 |
| | | Upstream | -19 |
Matrix_288 | RAP2.3 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_295 | ERF1 | Not available | Upstream | -20 |
| | | Upstream | -17 |
Matrix_321 | HRD | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_334 | AT3G23230 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_343 | AT2G33710 | Not available | Upstream | -22 |
| | | Upstream | -19 |
Matrix_344 | ATERF15;AT4G18450 | Not available | Upstream | -20 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_360 | ORA59 | Not available | Upstream | -20 |
| | | Upstream | -17 |
Matrix_363 | RAP2.3 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_378 | ATERF1 | Not available | Upstream | -22 |
| | | Upstream | -19 |
Matrix_394 | DREB_U | Not available | Upstream | -18 |
Matrix_405 | DREB2C | Not available | Upstream | -20 |
Matrix_406 | ATERF-7 | Not available | Upstream | -20 |
| | | Upstream | -17 |
Matrix_409 | DEAR3 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_448 | ATERF6 | Not available | Upstream | -21 |
Matrix_45 | DRN | Not available | Upstream | -20 |
| | | Upstream | -17 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_462 | ATERF-8 | Not available | Upstream | -20 |
| | | Upstream | -17 |
Matrix_473 | RRTF1 | Not available | Upstream | -22 |
| | | Upstream | -19 |
Matrix_484 | ATERF13 | Not available | Upstream | -20 |
| | | Upstream | -17 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_517 | ERF12 | Not available | Upstream | -20 |
| | | Upstream | -17 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_84 | AtGRF6 | Not available | Upstream | -22 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Matrix_91 | CRF3 | Not available | Upstream | -21 |
| | | Upstream | -18 |
Motif_129 | GAGAGMGSA1 | GAGA element found in the promoter of the heme and chlorophyll synthesis gene Gsa1 in soybean; GAGA binding protein (GBP) binds to (GA)n/(CT)n DNA | Upstream | -101 |
| | | Upstream | -99 |
| | | Upstream | -97 |
| | | Upstream | -95 |
| | | Upstream | -93 |
Motif_194 | EBOXBNNAPA | E-box of napA storage-protein gene of Brassica napus;This sequence is also known as RRE (R response element); MYC recognition site found in the promoters of the dehydration-responsive gene rd22 and many other genes in Arabidopsis; Binding site of ATMYC2 (previously known as rd22BP1); see E-box and MYCATRD22; MYC recognition sequence in CBF3 promoter; Binding site of ICE1 (inducer of CBF expression 1) that regulates the transcription of CBF/DREB1 genes in the cold in Arabidopsis; ICE1 | Upstream | -11 |
Motif_226 | E2F1OSPCNA | re2f-1 found in the promoter of rice PCNA gene; Located between -142 and -135; te2f-1 found in the promote of Tobacco PCBA gene; Located between -122 and -115; Binding site of OsE2F1 and OsE2F2; Involved in transcriptional activation in actively dividing cells and tissue | Upstream | -25 |
Motif_286 | SEBFCONSSTPR10A | Binding site of the potato silencing element binding factor (SEBF) gene found in promoter of pathogenesis-related gene (PR-10a); Located between -45 and -39; Similar to the auxin response element | Upstream | -50 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -19 |
| | | Upstream | -16 |
Motif_365 | ARF1 binding site motif | ARF (auxin response factor) binding site found in the promoters of primary/early auxin response genes of Arabidopsis thaliana; AuxRE;Binding site of Arabidopsis ARF1 (Auxin response factor1); Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter;Found in D1 or D4 element in Soybean GH3 promoter; This element was enriched in the 5'-flanking region of genes up-regulated by both IAA and BL;Dimerization and DNA binding of auxin response factors | Upstream | -50 |
Motif_372 | E2FAT | E2F-binding site found in many potential E2F target genes; most potential E2F targets identified in silico show a cell cycle-regulated expression | Upstream | -25 |
Motif_383 | UPRE-III(bZIP60) | The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis | Upstream | -125 |
Motif_441 | GAGA8HVBKN3 | GA octodinucleotide repeat found in intron IV of the barley gene Bkn3; Binding site for GAGA-binding factor BBR | Upstream | -101 |
| | | Upstream | -99 |
| | | Upstream | -97 |
| | | Upstream | -95 |
| | | Upstream | -93 |
| | | Upstream | -91 |
Motif_450 | E2FCONSENSUS | E2F consensus sequence of all different E2F-DP-binding motifs that were experimentally verified in plants | Upstream | -25 |
Motif_484 | RAV1-B binding site motif | Binding consensus sequence of an Arabidopsis transcription factor, RAV1; RAV1 specifically binds to DNA with bipartite sequence motifs of RAV1-A (CAACA) and RAV1-B (CACCTG); RAV1 protein contain AP2-like and B3-like domains; The AP2-like and B3-like domains recognize the CAACA and CACCTG motifs, respectively; The expression level of RAV1 were relatively high in rosette leaves and roots; RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants | Upstream | -11 |
Motif_584 | UPRE-III(bZIP60) | The plant-specific transcription factor NAC103 is induced by bZIP60 through a new cis-regulatory element to modulate the unfolded protein response in Arabidopsis | Upstream | -125 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Upstream | -27 |
| | | Upstream | -26 |
Motif_663 | E2F binding site motif;E2F/DP BS in AtCDC6 | Not available | Upstream | -25 |
Motif_682 | GT1GMSCAM4 | GT-1 motif found in the promoter of soybean CaM isoform, SCaM-4; Plays a role in pathogen- and salt-induced SCaM-4 gene expression | Upstream | -27 |
Motif_69 | CTRMCAMV35S | CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA | Upstream | -101 |
| | | Upstream | -99 |
| | | Upstream | -97 |
| | | Upstream | -95 |
| | | Upstream | -93 |
| | | Upstream | -91 |
| | | Upstream | -89 |
| | | Upstream | -87 |
| | | Upstream | -85 |
| | | Upstream | -83 |