PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_679
Name: SB1NPABC1
Description: Sclareol box1 (SB1) found at -827 of a plasma membrane ATP binding cassette (ABC) transporter gene (NpABC1) in N. plumbaginifolia; Mutation in SB3 completely abolished sclareolide-mediated expression

Sequence: CACTAACACAAAGTAA
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_546	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	62.50%
Motif_44	AGL25	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis	62.50%
Motif_449	AGL25; SVP	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis. Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	62.50%
Motif_553	BOX2PSGS2	Box 2 in glutamine synthetase (GS2) gene in pea; Repeated in tandem with a partial palindrome located between the repeats; Located at ca. -300 of pea GS2	56.25%
Motif_690	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	56.25%
Motif_387	AG BS in SPL/NOZ	The homeotic protein AGAMOUS controls microsporogenesis by regulation of SPOROCYTELESS	56.25%
Motif_588	TL1ATSAR	TL1, a consensus sequence overrepresented in the promoter regions of all 13 NPR1-responsive ER-resident genes surveyed; NPR1 is Nonexpressor of pathogenesis-related genes 1, also known as NIM1	56.25%
Motif_208	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	56.25%
Motif_23	14BPATERD1	14 bp region (from -599 to -566) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis	56.25%
Motif_578	BBOXSITE1STPAT	10 base pair motif (site 1) within the B-box found in the potato patatin gene promoter; Involved in potato tuber-specific and sucrose-inducible gene expression; Storekeeper (STK) binds to this region and regulates patatin expression in potato	56.25%
Motif_296	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	56.25%
Motif_605	20NTNTNOS	20nt (20 nucleotide sequence) found in the promoter on tobacco nopalin synthase (nos) gene promoter; Containing two hexamer motifs (TGAGCT) and a spacer region; The spacer region between two hexamer motifs is essential; Important for the gene expression; Essential for response to wounding, auxin, MJ, and SA; Very similar to ASF-1 binding site	56.25%
Motif_333	GLUTEBP1OS	Glutelin BP-1; Binding site in the promoter region of glutelin Gt3 gene family of nuclear factor (PB-1); PB-1 is observed only in nuclear extract of developing seeds	56.25%
Motif_45	AGL25; SOC1	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis;Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	56.25%
Motif_2	ACGTSEED2	ACGT motif related to seed expression; Gene: French bean phaseolin; transacting factor: 02	56.25%
Motif_541	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	56.25%
Motif_153	MARABOX1	A-box found in SAR(scaffold attachment region; or matrix attachment region, MAR)	53.13%
Motif_446	C1MOTIFZMBZ2	C1-motif; Similar to Myb-box; Found in the promoter region of maize Bronze2 ( glutathione S-transferase) gene; C1 binding; C1-motif and R-motif were shown to be important for full R and C1 activation of the Bz2 promoter	53.13%
Matrix_464	AGL15; AGL71	Not Available	52.83%
Matrix_132	SOC1	Not Available	52.57%
Matrix_18	AP3	Not Available	52.53%
Matrix_208	AP1	Not Available	50.80%
Matrix_407	AP1	Not Available	50.13%
Motif_225	PRHA BS in PAL1; PRHA BS in PAL1	Developmental and auxin-induced expression of the Arabidopsis prha homeobox gene	50.00%
Motif_229	D2GMAUX28	D2; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -703 and -716; A/T-rich sequence	50.00%
Motif_75	TEFBOXATEEF1AA1	tef-box found in the Arabidopsis eEF1AA1 gene promoter; An activating sequence associated with telo-box; Required for the gene expression in root primordia; Acts co-operatively with telo-box; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems	50.00%
Motif_476	XYLAT	cis-element identified among the promoters of the core xylem gene set	50.00%
Motif_470	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	50.00%
Motif_477	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence;Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	50.00%
Motif_260	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	50.00%
Motif_496	JASE1ATOPR1	JASE1found in promoter of Arabidopsis thaliana 12-oxo-phytodienoic acid-10,11-reductase (OPR1) gene; Located between -179 and -170; Involved in up-regulation by both senescence and JA;Identical promoter elements are involved in regulation of the OPR1 gene by senescence and jasmonic acid in Arabidopsis	50.00%
Motif_257	BOX1PSGS2	Box 1 element in pea glutamine synthetase (GS2) gene; An element in a 33-bp AT-rich sequence (box 1) of the 5' end of a GS2 promoter; Located at -837 to -827 of pea GS2; Multimer of box 1 element was used to isolate a cDNA encoding an AT-rich DNA binding protein (ATBP-1)	50.00%
Motif_540	CCA1 motif1 BS in CAB1	A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	50.00%
Motif_568	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	50.00%
Motif_678	ASF1ATNOS	Tobacco ASF-1 binding site in nopaline synthase (NOS) promoter of Ti-plasmid of Agrobacterium tumefaciens; From -131 to -111; Containing two hexamer motifs; Essential for the nos promoter activity	50.00%
Motif_172	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	50.00%
Motif_646	AACAOSGLUB1	AACA motif found in GluB-1 gene in rice; Required for endosperm-specific expression; Highly conserved in the 5'-flanking region of glutelin genes	50.00%
Motif_660	GT-3b	Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor	50.00%
Motif_664	C1GMAUX28	C1; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -463 and -448; A/T-rich sequence	50.00%
Motif_669	FUS3; ABI3	Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product	50.00%
Motif_176	AS1LIKECSHPRA	as-1-like motif found in cucumber hydroxypyruvate reductase (hprA) gene; Required for cytokinin responsiveness; Also see CYTOSITECSHPRA	50.00%
Motif_175	BOX2PVCHS15	Box 2 of bean (P.v.) chs15 promoter; SBF-1 binding site	50.00%
Motif_209	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	50.00%
Motif_550	MRE motif in CHS	MREAtCHS (MRE = Myb Recognition Element) found in the LRU (light-responsive unit) in Arabidopsis chalcone synthase (CHS) gene promoter; Required for UV-B and UV-A/blue light responsiveness;Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system	50.00%
Motif_598	SORLIP3AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.00%
Motif_600	JASE2 motif in OPR1	JASE2found in promoter of Arabidopsis thaliana 12-oxo-phytodienoic acid-10,11-reductase (OPR1) gene; Located between -112 and -100; Involved in up-regulation by both senescence and JA; JASE2 contains a mixed A/C box-like motif;Identical promoter elements are involved in regulation of the OPR1 gene by senescence and jasmonic acid in Arabidopsis	50.00%
Motif_692	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	50.00%
Motif_96	GARE4HVEPB1	GARE-4 found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -142 to -156; Required for GA induction; Putative binding site of transcription factor, GAMyB	50.00%
Motif_243	TELOBOXATEEF1AA1	telo-box (telomere motif) found in the Arabidopsis (A.t.) eEF1AA1 gene promoter; Conserved in all known plant eEF1A gene promoters; Found in the 5' region of numerous genes encoding components of the translational apparatus; Required for the activation of expression in root primordia; Acts co-operatively with tef-box; Binding site of AtPur alpha-1; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems	50.00%
Motif_331	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	50.00%
Motif_288	NONAMERMOTIFTAH3H4	Nonamer motif found in promoter of wheat histone genes H3 and H4	50.00%
Motif_294	HSRENTHSR203J	HSRE(HSR203 responsive element) in tobacco responsible for the marked induction of the HSR203J gene during the HR (hypersensitive response); HSR203J is specifically activated during the early steps of incompatible plant/pathogen interactions	50.00%
Motif_373	TATABOX1	TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	50.00%
Motif_389	BOXBPSAS1	Box B in pea asparagine synthetase (AS1) gene; Found at -61; AS1 is negatively regulated by light; Box B binds with nuclear proteins	50.00%
Motif_420	SORLREP2AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.00%
Motif_315	AtSR1	A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants	50.00%
Motif_416	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	50.00%
Motif_283	TRANSTART	plant consensus sequence for translation start site	50.00%
Motif_311	ANAC019; ANAC055; ANAC072	Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter	50.00%
Motif_25	GLUTAACAOS	glutelin common motif; AACA motif; Conserved in all member of rice glutelin	50.00%