PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_569
Name: TACBBFNTEAS4
Description: TacBBF (TAC box binding factor) binding site in tobacco 5-epi-aristolochene synthase (EAS4) gene; Required for elicitor-inducibility; EAS is involved in sesquiterpene phytoalexin biosynthesis; Found between -245 and -232; Appears to function as a silencer or repressor of EAS gene expression

Sequence: ACTCTACAGTACTC
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_546	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	64.29%
Motif_406	ABREBZMRAB28	ABA-responsive element (ABRE B) found at -105 to -96 in maize rab28; Maize rab28 is ABA-inducible in embryos and vegetative tissues	64.29%
Motif_629	L1DCPAL1	L1 element, found in PAL1 promoter in carrot (Daucus carota), is a protoplastization (dilution) responsive element; L1 contains Box L-like sequence (ACCTACCC); see also BOXL CORE of DC PAL1	64.29%
Motif_67	LS5ATPR1	LS5; A negative regulatory element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA2; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense response; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors	64.29%
Motif_56	O2F3BE2S1	opaque-2 recognition site F3 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F3 is hybrid of A/G box	64.29%
Matrix_1	TOE2	Not Available	60.71%
Matrix_422	TOE1	Not Available	59.93%
Motif_197	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	57.14%
Motif_95	UPRE2AT	XBP1 binding site-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana;Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR	57.14%
Motif_555	ABRECE3ZMRAB28	CE3 (coupling element 3) in maize rab28 gene promoter; ABA responsive element; stress response; Similar (10 of 12) to CE3 in A1 gene of barley; See ABRECE3HVA1; Found at -126 to -115	57.14%
Motif_290	CCTCGTGTCTCGMGH3	Sequence found in D1 element in Soybean GH3 gene promoter; Showed constitutive activity with TGTCTC element; Confers auxin inducibility; Binding site of nuclear protein	57.14%
Motif_499	AtMYC2	A basic helix-loop-helix transcription factor in Arabidopsis, MYC2, acts as a repressor of blue light-mediated photomorphogenic growth	57.14%
Motif_566	AREB1; AREB2	Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	57.14%
Motif_69	CTRMCAMV35S	CT-rich motif (inverted GAGA) found in a 60-nucleotide region (S1) downstream of the transcription start site of the CaMV 35S RNA; Can enhance gene expression; Inverted GAGA	57.14%
Motif_373	TATABOX1	TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	57.14%
Motif_498	SGBFGMGMAUX28	bZIP proteins SGBF-1 and SGBF-2 binding site in soybean GmAux28 gene promoter	57.14%
Motif_64	ABAREG2	Motif related to ABA regulation; Gene: sunflower helianthinin; transacting factor: bZIP	57.14%
Motif_501	ELRE2PCPAL1	One of two elicitor (ELRE) and light response elements (LRE) found in the parsley (P.c.) phenylalanine ammonia-lyase (PAL-1) gene promoter; Involved in UV light and elicitor responsiveness; Conserved in several elicitor or light-responsive genes	57.14%
Motif_53	ABREA2HVA1	A2 of ABRC3; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3	57.14%
Motif_276	LREBOX3PSRBCS3	LRE (light-responsive element) Box III of pea rbcS-3A gene; GT-1 binding	57.14%
Motif_112	GBOX10NT	One of 11 G-box sequences in tobacco; Required for high-level constitutive expression in seed, leaf, root, axillary bud, almost all parts of flower buds and pollen	57.14%
Motif_507	ABASEED1	ABA regulation; seed expression; Gene: carrot Dc3; Transacting factor: bZIP; Contains ACGT motif	57.14%
Motif_535	ACIPVPAL2	ACI element found at -83 to -74 of bean PAL2 promoter; AC-rich element; ACI element is required for vascular-specific gene expression; See also ACIIPVPAL2 and ACIIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissue-specific expression of pAL2 gene	57.14%
Motif_295	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	57.14%
Motif_654	DR5GMGH3	DR5; A highly active synthetic auxin response element; Created by site-directed mutations in a natural composite AuxRE found in the soybean GH3 promoter; The DR5 showed greater auxin responsiveness; Binding site of ARF1	57.14%
Motif_690	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	57.14%
Motif_687	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	57.14%
Motif_418	ABRE2HVA22	ABRE2 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; see ABRE3 of HVA22 gene; see CE1 (coupling element 1 = TGCCACCGG)	57.14%
Motif_11	L4DCPAL1	L4 element, found in PAL1 promoter in carrot (Daucus carota), is a UV-B responsive element; L4 contains Box L-like sequence (TCCAACCA)	57.14%
Motif_252	GBOXPC	G box; Binding site of parsley cytosolic G-box binding factors (cytosolic GBFs); Cytosolic G-Box binding activity is modulated by light; DNA binding activity of cytosolic GBFs is regulated by cytosolic phosphorylation/dephospholylation activities; Cytosolic GBFs are translocated to the nucleus in a light-regulated manner	57.14%
Motif_267	WBOXGACAD1A	W-box found in the promoter region of the CAD1-A (cotton (+) delta-cadinene synthase-A) gene (located in the region -340 to -327) of cotton;Binding site of GaWRKY1; GaWRKY1 regulates sesquiterpene biosynthesis in cotton	57.14%
Motif_2	ACGTSEED2	ACGT motif related to seed expression; Gene: French bean phaseolin; transacting factor: 02	57.14%
Motif_273	ABRECE3HVA1	CE3 (coupling element 3) of ABRC3 in barley HVA1 gene; ABRC3 (ABA response complex 3) of HVA1 consists of CE3 and A2; ABA responsive element; stress response; Found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant (Lea) protein; ABRC1 OF HVA22 consists of CE1 and A3	57.14%
Motif_438	CAMTA5; CAMTA1; CAMTA2; CAMTA3	Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance	57.14%
Motif_162	ABRE3HVA22	ABRE3 of barley HVA22 gene; G-box; component of ABA response complex in HVA22 gene; ABA response complex 1(ABRC1)=A3(previously designated ABRE3)+CE1	57.14%
Motif_621	bZIP23; bZIP19	Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency	57.14%
Matrix_439	AP3	Not Available	56.94%
Matrix_219	AGL15	Not Available	56.42%
Motif_61	PALBOXLPC	Box L; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley; None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation	54.53%
Matrix_393	REM1	Not Available	53.16%
Matrix_51	LFY	Not Available	53.00%
Matrix_523	FUSCA3	Not Available	52.78%
Matrix_205	AGL15	Not Available	52.68%
Matrix_514	DYT1	Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development	51.97%
Matrix_388	SNZ; SMZ; TOE2	Not Available	51.94%
Matrix_469	NAC041; NAC083	Not Available	51.33%
Motif_474	ELRENTCHN50	Elicitor-responsive element (ElRE); Found in tobacco basic class I chitinase gene (CHN50)	51.16%
Motif_5	SORLREP1	Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.96%
Matrix_134	ABF1	Not Available	50.71%
Matrix_269	FHY3/FAR1	Not Available	50.43%
Matrix_273	ANAC55	Not Available	50.27%
Motif_427	LS7ATPR1	LS7; A positive salicylic acid-inducible element found in the Arabidopsis PR-1 gene promoter; Binding site of TGA1; NPR1 increased the binding of TGA2 to the element; NPR1 is essential in activating systemic, inducible plant defense responses; TGA6 expressed in roots in young seedlings; TGA2.1 is a direct transcriptional activator; TGA2.2 stabilizes TGA2.1 binding; The Arabidopsis NPR1/NIM1 protein enhances the DNA binding activity of a subgroup of the TGA family of bZIP transcription factors	50.00%
Motif_377	SURE2STPAT21	Sucrose Responsive Element 2 (SURE2); A motif conserved among genes regulated by sucrose; See also SURE1ST; Found between -184 and -156 bp in the patatin (a major tuber protein) gene promoter of potato	50.00%
Motif_415	RBCSGBOXPS	rbcS G-box; 5'upstream region (-211) of pea rbcS gene; binding with trans factor GBF (CG-1); Light-responsiveness	50.00%
Motif_407	CE3OSOSEM	CE3 (Coupling Element 3) found in the promoter of the rice Osem gene; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption	50.00%
Motif_412	SORLREP5AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.00%
Motif_399	UPRMOTIFIAT	Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc.	50.00%
Motif_394	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	50.00%
Motif_376	WRKY63	ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis	50.00%
Motif_154	ABREBNNAPA	ABRE of napA storage-protein gene of Brassica napus; ABA responsive element; dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE; B3 domain of ABI3 interacts with the RY/G complex	50.00%
Motif_388	CPRFPCCHS; AtbZIP1	BoxII; Binding site of CPRF-1, -2, -3 and -4(Common Plant Regulatory Factor) in the parsley light responsive chalcone synthase (CHS) gene promoter; CPRF proteins are bZIP class transcription factors; CPRF proteins participates in the light-mediated activation of the CHS gene in parsley; ACE; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; ACE; Binding site of parsley bZIP factors CPRF1 and 4; Found in the parsley light responsive chalcone synthase (CHS) gene promoter; The proline-rich domains of CPRF1 and 4 activate transcription; CPRF1-containing bZIP heterodimer interacts with ACE in vivo; The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	50.00%
Motif_426	MYB58; MYB63	MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis	50.00%
Motif_333	GLUTEBP1OS	Glutelin BP-1; Binding site in the promoter region of glutelin Gt3 gene family of nuclear factor (PB-1); PB-1 is observed only in nuclear extract of developing seeds	50.00%
Motif_203	bZIP23; bZIP19	Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency	50.00%
Motif_275	AtbZIP1	The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding	50.00%
Motif_300	ACGTROOT1; HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression. ACGT motif related to root expression; Gene: synthetic; perfect palindromic sequence (PA) containing G-box-related sequence; transacting factor: TAF-1; Binding of SGBF-1 (a Soybean G-box binding bZIP transcription factor) to ABRE is enhanced by SCOF-1 (a zinc finger protein ); Transcription of SCOF-1 is induced by low temperature and ABA	50.00%
Motif_306	E2Fb	Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-regulated gene AtCDC6 and is a member of a multigene family with differential activities	50.00%
Motif_128	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	50.00%
Motif_274	MYB1 binding site motif	Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein	50.00%
Motif_260	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	50.00%
Motif_237	O2F1BE2S1	opaque-2 recognition site F1 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F1 is hybrid C/G box	50.00%
Motif_239	MYB2	Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	50.00%
Motif_251	SUP	The Arabidopsis SUPERMAN protein is able to specifically bind DNA through its single Cys2-His2 zinc finger motif	50.00%
Motif_144	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	50.00%
Motif_308	SP8BFIBSP8AIB	One of SPBF binding site (SP8a); Found at -155 of gSPO-A1 (sporamin) gene, and also at -880 of gB-Amy (beta-amylase) gene in sweet potato; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8BIB; SP8BF activity is also found in tobacco; SP8a found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b	50.00%
Motif_123	GT-1	Molecular dissection of GT-1 from Arabidopsis	50.00%
Motif_356	S2FSORPL21	S2F binding site (S2 site) in spinach RPL21 gene encoding the plastid ribosomal protein L21; S2 site (CATACAWW) is conserved in promoter region of many nuclear genes encoding plastid proteins; Leaf-specific, light-independent regulatory element; S2 site is related to but different from the light-responsive GT-1 binding site	50.00%
Motif_354	VSF1PVGRP18	VSF-1 binding site in French bean grp1.8 gene promoter; VSF-1 is a tomato bZIP transcription factor; VSF-1 binding site is found in 28 bp vs-1 element; This sequence controls vascular gene expression in transgenic tobacco; VS-1 found in bean grp1.8 gene promoter; Located between -203 and -176; Partially overlaps with NRE; Confers xylem-specific expression	50.00%
Motif_109	PREMOTIFNPCABE	Motif sequence repeated many times in two positive regulatory elements, PRE1 (-1554 to -1182) and PRE2 (-747 to -516) found far upstream in the tobacco CAB gene (cab-E) promoter; Confer maximum levels of photoregulated expression	50.00%
Motif_361	SORLREP4AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; Common in circadian-regulated promoters; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.00%
Motif_362	TGA2 octamer	palindromic octamer found enriched in chip-chip regions for TGA2	50.00%
Motif_338	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	50.00%
Motif_334	MYB1; MYB2	An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. Evidence for a role for AtMYB2 in the induction of the Arabidopsis alcohol dehydrogenase gene (ADH1) by low oxygen	50.00%
Motif_319	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	50.00%
Motif_325	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	50.00%
Motif_89	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	50.00%
Motif_117	RYREPEAT4	RY repeat motif; Sph element; seed expression; ABA; Gene: maize C1, wheat Em, rice rab16A, maize Rab17; Transacting factor: VP1 (maize C1); See RYREPEAT2; The RY sequence motif does not play a major role in VP1 or ABA regulation of Em gene in protoplast; VP1 gene is specifically required for expression of the maturation program in seed development	50.00%
Motif_202	OPAQUE2ZM22Z	Opaque-2 (O2) target sequence in maize 22- and 27-kD zein promoters; ACGT motif; Related to seed expression; O2 target sequence; Gene: maize 22-kD zein; transacting factor: 02	50.00%
Motif_480	ABRE2HVA1	ABA responsive element, ABRE2, found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response	50.00%
Motif_32	DREB2A; DREB1A; AtTINY2; DREB1C; DREB1B	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana. Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems.Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit.Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	50.00%
Motif_161	SPL7; SPL4	A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	50.00%
Motif_560	GLUTECOREOS	Core site required for binding of the trans-acting factor in the promoter region of rice glutelin (type 2 glutelin gene family)	50.00%
Motif_571	GBOXSORBCS1	G-box found in the spinach RBCS-1 gene promoter; Located between -219 and -212; G-box trimer confers relatively high level expression in roots	50.00%
Motif_578	BBOXSITE1STPAT	10 base pair motif (site 1) within the B-box found in the potato patatin gene promoter; Involved in potato tuber-specific and sucrose-inducible gene expression; Storekeeper (STK) binds to this region and regulates patatin expression in potato	50.00%
Motif_36	OCETYPEIINTHISTONE	Type II element; Oct-containing composite element Type II found in tobacco histone gene promoter; Oct (octomer) motif is paired with TCA motif to form Type II element; Required for S-phase specific and meristematic tissue-specific expression	50.00%
Motif_553	BOX2PSGS2	Box 2 in glutamine synthetase (GS2) gene in pea; Repeated in tandem with a partial palindrome located between the repeats; Located at ca. -300 of pea GS2	50.00%
Motif_533	Bellringer/replumless/pennywise BS3 IN AG	Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems	50.00%
Motif_540	CCA1 motif1 BS in CAB1	A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	50.00%
Motif_431	E2Fb	Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-regulated gene AtCDC6 and is a member of a multigene family with differential activities	50.00%
Motif_550	MRE motif in CHS	MREAtCHS (MRE = Myb Recognition Element) found in the LRU (light-responsive unit) in Arabidopsis chalcone synthase (CHS) gene promoter; Required for UV-B and UV-A/blue light responsiveness;Identification of UV/blue light-response elements in the Arabidopsis thaliana chalcone synthase promoter using a homologous protoplast transient expression system	50.00%
Motif_589	ARECOREZMGAPC4	Putative binding site for a Myb found in the promoter of maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene; Essential for anaerobic induction	50.00%
Motif_23	14BPATERD1	14 bp region (from -599 to -566) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis	50.00%
Motif_633	PE2FNTRNR1A	pE2F (proximal E2F elemen) at -143bp of tobacco RNR1a promoter; E2F factors involved in gene induction at the G1/S transition of the cell cycle; Important for regulating specific RNR1a (ribonucleotide reductase large subunit) gene expression in response to UV-C irradiation	50.00%
Motif_676	RNFG1OS	RNFG1 binding site; Box I; RNFG1 is one of two Rice Nuclear Factors required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV); Box I is found at -3 to +8 of RTBV promoter; See also RNFG2OS	50.00%
Motif_674	SPL4; SPL1; SPL5	Molecular characterisation of the Arabidopsis SBP-box genes. Gene,A novel zinc-binding motif revealed by solution structures of DNA-binding domains of Arabidopsis SBP-family transcription factors	50.00%
Motif_644	ABREDISTBBNNAPA	dist B (distal portion of B-box) found in napA gene of Brassica napus; Shows similarity to ABRE; Found between -148 and -124; Required for seed specific expression and ABA responsiveness;dist B ABRE mediated transactivation by ABI3 adn ABI3-dependent response to ABA; a tetramer of the composite RY/G complex mediated only ABA-independent transactivation by ABI3; B2 domain of ABI3 is necessary for ABA-independent and ABA-dependent activation through the dist B ABRE	50.00%
Motif_13	E2F-varient binding site motif	A genome-wide identification of E2F-regulated genes in Arabidopsis	50.00%
Motif_617	ABRE3HVA1	ABA responsive element, ABRE3, found in barley HVA1 gene encoding a class 3 late embryogenesis-abundant protein; stress response	50.00%
Motif_598	SORLIP3AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.00%
Motif_599	LREBOXIIPCCHS1; HY5	BoxII; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; Highly conserved in various light inducible gene promoters; Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	50.00%
Motif_692	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	50.00%
Motif_613	SB3NPABC1	Sclareol box3 (SB3) found at -216 of a plasma membrane ATP binding cassette (ABC) transporter gene (NpABC1) in N. plumbaginifolia; Mutation in SB3 completely abolished sclareolide-mediated expression	50.00%
Motif_528	ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	50.00%
Motif_38	RSEPVGRP1	RSE (root-specific element) of bean GRP1.8 gene; consensus sequence	50.00%
Motif_483	ABREMOTIFAOSOSEM	motif A ABRE-like sequence found in rice Osem gene promoter; Essential for activation by VP1; Important for regulation by ABA;TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption;ABRE motif A found in the promoter of the rice Osem gene; ACGT-containing ABRE; Required for ABA-responsiveness and VP1 activation; Binding site of TRAB1; Motif A and CE3 are functionally equivalent; TRAB1, bZIP transcription factor, interacts with VP1 and mediates abscisic acid-induced transcritption	50.00%
Motif_74	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	50.00%
Motif_487	ACIIIPVPAL2	ACIII element found at -246 to -238 of bean PAL2 promoter; ACIII element is required for vascular-specific gene expression; See also ACIPVPAL2 and ACIIPVPAL2; Three AC-elements, which are possible Myb protein binding sites, together with a G-box, interact to direct the complex patterns of tissu-specific expression of pAL2 gene	50.00%
Motif_211	ABREMOTIFIOSRAB16B	Motif I found in the promoter of rice rab16B gene; Motif I and motif III are both required for ABA responsiveness; However, each can substitute for the other	50.00%
Motif_62	AtMYB44	Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants	50.00%
Motif_73	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	50.00%
Motif_231	EIN3	Ethylene signaling in Arabidopsis involves feedback regulation via the elaborate control of EBF2 expression by EIN3	50.00%
Motif_172	MYB98	MYB98 positively regulates a battery of synergid-expressed genes encoding filiform apparatus localized proteins	50.00%
Motif_229	D2GMAUX28	D2; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -703 and -716; A/T-rich sequence	50.00%
Motif_158	ZDNAFORMINGATCAB1	Z-DNA-forming sequence found in the Arabidopsis chlorophyll a/b binding protein gene (cab1) promoter; Involved in light-dependent developmental expression of the gene; Z-box; Activation of Z-box containing promoters is regulated by downstream regulatory components, COP1 and HY5; phyB and CRY1 photoreceptors act redundantly to induce Z-box containing promoters in white light; Identification of upstream regulatory elements involved in the developmental expression of the Arabidopsis thaliana cab1 gene	50.00%
Motif_208	MYB80	The MYB80 transcription factor is required for pollen development and the regulation of tapetal programmed cell death in Arabidopsis thaliana	50.00%
Motif_500	D1GMAUX28	D1; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes; Binding site of GmGT-2 which is the GT-2 family of transcription factors; GmGT-2 are down-regulated by light in a phytochrome-dependent manner	50.00%
Motif_489	SORLREP3AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and also all SORLIPs;Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.00%
Motif_58	LREBOXIPCCHS1	BoxI; Light responsive element (LRE) found in the parsley CHS-1 (chalcone synthase-1) gene promoter; Required for light responsiveness; nuclear protein binding site; MRECHS (MRE=Myb Recognition Element)Recognition site of MYB305 and a novel factor PcMYB1 (Myb1 from P. crispum); PcMYB1 contains only one MYB repeat	50.00%
Motif_55	MRNASTA1CRPSBD	mRNA stability determinant found in 5'-UTR of psbD mRNA of Chlamydomonas reinhardtii; Required for the stable accumulation; Located within the first 12 nucleotides of the leader region	50.00%
Motif_516	BZIP12; ABI5	The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis	50.00%
Motif_521	RBCSBOX3PS	rbcS box III; 5' upstream region (-114) of pea rbcS gene; binding with trans factor GT-1; one of GT-1 boxes	50.00%