PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_482
Name: GARE2
Description: Putative gibberellin responsive element; Consensus sequence of GA inducible alpha-amylase genes from rice, barley and wheat

Sequence: RTAACARANTCYGG
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_96	GARE4HVEPB1	GARE-4 found in the barley EPB-1 (cysteine proteinase) gene promoter; Located between -142 to -156; Required for GA induction; Putative binding site of transcription factor, GAMyB	77.77%
Motif_25	GLUTAACAOS	glutelin common motif; AACA motif; Conserved in all member of rice glutelin	59.91%
Motif_677	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	59.06%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	58.69%
Motif_608	OBP-1-4-5 BS in GST6	OBP1, 4, and 5 (OBF binding protein) binding site found in the Arabidopsis GST6 gene promoter; Located between -398 and -388; OBP1 is able to stimulate the binding of OBF proteins to the GST6 promoter;Overexpression of OBP3 lead to severe growth defect with altered root development and yellowish leaves; All OBP proteins contain transcriptional activation domains in their C-term. region; Dof protein play important roles in plant growth and development;The promoter of a H202-inducible, Arabidopsis glutathione S-transferase gene contains closely linked OBF- and OBP1-binding RT	57.30%
Motif_540	CCA1 motif1 BS in CAB1	A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	57.14%
Matrix_160	RVE1	Not Available	54.61%
Motif_140	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	54.53%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	54.53%
Motif_173	HSE	HSE (heat shock response element); consensus sequence found in the promoter regions of heat shock protein genes; HSF binding site; HsfA3, a new member of the Hsf (heat stress transcription factor) family; was isolated by yeast two-hybrid screening, using HsfA1 as a bait; HsfA3 is a single copy gene with all conserved sequence elements characteristic of a heat stress transcription factor	54.21%
Matrix_383	CCA1	Not Available	53.95%
Matrix_246	ARR10	Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators	53.83%
Motif_420	SORLREP2AT	one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; See also all SORLREPs and all SORLIPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	53.57%
Motif_214	TAC1	Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1	53.57%
Matrix_184	AGL15	Not Available	53.08%
Motif_446	C1MOTIFZMBZ2	C1-motif; Similar to Myb-box; Found in the promoter region of maize Bronze2 ( glutathione S-transferase) gene; C1 binding; C1-motif and R-motif were shown to be important for full R and C1 activation of the Bz2 promoter	52.77%
Motif_637	SARD1; CBP60g	Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors	52.77%
Matrix_74	LFY	Not Available	52.62%
Matrix_67	GLK1	Not Available	52.49%
Matrix_327	ARR11	Not Available	51.37%
Motif_408	EVENINGAT	Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock	50.96%
Motif_257	BOX1PSGS2	Box 1 element in pea glutamine synthetase (GS2) gene; An element in a 33-bp AT-rich sequence (box 1) of the 5' end of a GS2 promoter; Located at -837 to -827 of pea GS2; Multimer of box 1 element was used to isolate a cDNA encoding an AT-rich DNA binding protein (ATBP-1)	50.96%
Matrix_13	HAT5	Not Available	50.83%
Motif_30	HSELIKENTACIDICPR1	HSE-like motif in -56 region of acidic PR1 gene of tobacco; not found in basic PR1 gene	50.73%
Matrix_167	ZAT6	Not Available	50.53%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	50.49%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	50.43%
Motif_465	AtMYB44	Two novel MYB homologues with changed expression in late embryogenesis-defective Arabidopsis mutants	50.15%
Motif_91	SORLIP4AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	50.00%
Motif_520	AMYBOX1	amylase box; Conserved sequence found in 5'-upstream region of alpha-amylase gene of rice, wheat, barley	50.00%
Motif_43	CCA1 binding site motif	CCA1 binding site; CCA1 protein (myb-related transcription factor) interact with two imperfect repeats of AAMAATCT in Lhcb1*3 gene of Arabidopsis thaliana; Related to regulation by phytochrome;A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene	50.00%
Motif_74	HY5	Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression	50.00%