PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_328
Name: GLUTEBP2OS
Description: Glutelin BP-2; Binding with nuclear factors from developing seeds

Sequence: ATGCTCAATAGATATAAGT
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_240	IBOXLSCMCUCUMISIN	I-box-like sequence found in the region (from -254 to -215) of cucumisin (a subtilisin-like serine protease) in the fruit of melon; I-box-like sequence functions as a negative regulatory element	57.89%
Motif_84	C2GMAUX28	C2; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -552 and -553; Contains (ATT)4 sequence	57.89%
Motif_149	OCSENHANMOTIFAT	OCS enhancer element in octopine synthase gene (OCS) of Ti-plasmid of Agrobacterium tumefaciens; Binding with nuclear protein isolated from tobacco and maize; Tandem OCSTF binding-sites are essential for the activity of the Ocs-element; The Ocs-element occures rarely in plant gene promoters; OCS palindrome found in tobacco OCS (Octopine synthase gene) promoter; Located at -193 to -178; Binding site of ASF-1; Confers expression of the gene	57.89%
Motif_175	BOX2PVCHS15	Box 2 of bean (P.v.) chs15 promoter; SBF-1 binding site	57.89%
Motif_229	D2GMAUX28	D2; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -703 and -716; A/T-rich sequence	57.89%
Motif_267	WBOXGACAD1A	W-box found in the promoter region of the CAD1-A (cotton (+) delta-cadinene synthase-A) gene (located in the region -340 to -327) of cotton;Binding site of GaWRKY1; GaWRKY1 regulates sesquiterpene biosynthesis in cotton	57.89%
Motif_78	SITE3SORPS1	Site 3 of spinach (S.o.) rps1 promoter; S1F binding site	57.89%
Matrix_353	HAT5	Not Available	53.94%
Motif_44	AGL25	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis	52.63%
Motif_553	BOX2PSGS2	Box 2 in glutamine synthetase (GS2) gene in pea; Repeated in tandem with a partial palindrome located between the repeats; Located at ca. -300 of pea GS2	52.63%
Motif_345	GT-1	Molecular dissection of GT-1 from Arabidopsis	52.63%
Motif_75	TEFBOXATEEF1AA1	tef-box found in the Arabidopsis eEF1AA1 gene promoter; An activating sequence associated with telo-box; Required for the gene expression in root primordia; Acts co-operatively with telo-box; Plant interstitial telomere mitifs participate in the control of gene expression in root meristems	52.63%
Motif_613	SB3NPABC1	Sclareol box3 (SB3) found at -216 of a plasma membrane ATP binding cassette (ABC) transporter gene (NpABC1) in N. plumbaginifolia; Mutation in SB3 completely abolished sclareolide-mediated expression	52.63%
Motif_39	CYTOSITECSHPRA	13 bp sequence of unknown function found in cucumber hydroxypyruvate reductase (hprA) gene promoter; Protein binding site; Required for cytokinin responsiveness; See AS1LIKECSHPRA found in the same region; Also involved in light responsiveness	52.63%
Motif_302	OCSGMHSP26A	Ocs element found in soybean (Glycine max) heat shock gene (Gmhsp26-A) promoter; The element is a functional ocs-element; The element did not affect the promoter's response to heat or wounding	52.63%
Motif_449	AGL25; SVP	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis. Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	52.63%
Motif_612	RBCSBOX2PS	rbcS box II; 5' upstream region (-151) of pea rbcS gene; Binding with trans factor GT-1; one of GT-1 boxes; GT-1 may act as a molecular switch modulated by calcium-dependent phosphorylation and dephosphorylation in response to light signals	52.63%
Motif_458	ELEMENT2GMLBC3	Element 2 found in the promoter of soybean leghaemoglobin lbc3 gene; Binding site of nuclear extract from soybean nodules; Located at -161 to -176; Element 1 and Element 2 bind to the same nodule specific factor; Element 2 is highly conserved in other soybean lb gene promoter regions	52.63%
Motif_479	TGA1ANTPR1A	TGA1a binding site in tobacco PR1a gene; as-1-like sequence; Contains two TGACG elements reminiscent of activation sequence-1 (as-1); See other as-1-like sequences; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems	52.63%
Motif_355	BOXINTPATPB	Box I found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter	52.63%
Matrix_140	ATHB5	DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	50.77%
Motif_494	TOPOISOM	Topoisomerase cleavage site consensus sequence; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)	50.27%
Motif_142	HDZIPIIIAT	Ath b-9 HD-Zip (HD-Zip-9), a member of a small family of HD-Zip proteins (HD-ZIP III), in Arabidopsis recognize this sequence	50.00%