PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_264
Name: GCBP2ZMGAPC4
Description: Binding site of tobacco nuclear factor (GCBP-2) found in the maize GapC4 (Glyceraldehyde-3-phosphate dehydrogenase 4) gene promoter; Located between -293 and -285

Sequence: GTGGGCCCG
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_650	SITEIIAOSPCNA	Site IIa of rice PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See AUXREPSIAA4	77.78%
Matrix_266	TCP16	Determinants of the DNA binding specificity of class I and class II TCP transcription factors	74.67%
Motif_219	E2Fa	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	66.67%
Motif_332	SV40COREENHAN	SV40 core enhancer; Similar sequences found in rbcS genes	63.23%
Matrix_144	AT5G08330; AT5G23280	Not Available	62.52%
Motif_603	SITEIIATCYTC	Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice	61.11%
Matrix_40	TCP2	Not Available	59.11%
Matrix_482	AT2G25650; AT4G00270	Not Available	59.04%
Matrix_130	TCP16	Not Available	57.15%
Matrix_94	TCP5	Not Available	56.52%
Matrix_281	TCP13	Not Available	56.30%
Matrix_42	AT2G45680	Not Available	55.93%
Motif_366	RE1ASPHYA3	RE1 (putative repressor element) responsible for Pfr-directed repression of oat phyA3 phytochrome gene; Also found in pea AS1 (asparagine synthetase) gene	55.56%
Motif_337	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	55.56%
Motif_31	UPRE1AT	ERSEII-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana; Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR	55.56%
Motif_622	SORLIP2AT	one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data	55.56%
Motif_610	GATA-2; GATA-4; GATA-3; GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	55.56%
Motif_52	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	55.56%
Motif_413	WRKY11	Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	55.56%
Motif_305	SP1SV40	SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA)	55.56%
Motif_132	PIATGAPB	PI found in the Arabidopsis thaliana GAPB gene promoter; Located between -157 and -150; Mutations in the PI resulted in reductions of light-activated gene transcription; GAPB encodes the B subunit of chloroplast glyceraldehyde-3-phosphate dehydrogenase(GADPH) of A.T.; Promoter analysis of the nuclear gene encoding the chloroplast glyceraldehyde-3-phosphate dehydrogenase B subunit of Arabidopsis thaliana	55.56%
Motif_60	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	55.56%
Motif_619	SITEIIBOSPCNA	Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes	55.56%
Motif_189	CMSRE1IBSPOA	CMSRE-1 (Carbohydrate Metabolite Signal Responsive Element 1) found in the promoter of sweet potato sporamin A gene	55.56%
Motif_684	MNF1ZMPPC1	MNF1 binding site in maize Ppc1 (phosphoenolpyruvate carboxylase) gene promoter; Involved in light induction	55.56%
Matrix_82	TCP17	Not Available	55.41%
Motif_552	MRE1	MRE (metal responsive element); Consensus sequence of MRE; MRE; MEP-1; MBF-1; MTF-1	54.31%
Matrix_297	TCP15	Not Available	54.28%
Matrix_294	MEE35	Not Available	54.17%
Matrix_405	DREB2C	Not Available	52.91%
Matrix_232	TCP23	Not Available	52.88%
Matrix_216	TCP16	Not Available	52.55%
Matrix_348	AT5G51910	Not Available	52.31%
Matrix_507	TCP3	Not Available	51.32%
Matrix_11	TRFL5	Not Available	50.22%
Motif_207	MAMMALENHAN	Core sequence in enhancers from polyoma virus and from the IgM heavy chain gene	50.00%
Motif_177	-300MOTIFZMZEIN	Motif in -300 elements of alpha-zein genes of maize; homologous to the sequence to which transacting factors of AP-1, fos, jun or yeast hisS bind	50.00%