PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_235
Name: C8GCARGAT
Description: Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)

Sequence: CWWWWWWWWG
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_198	CARGATCONSENSUS	CArG consensus sequence found in the promoter of Arabidopsis SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO)	82.68%
Motif_47	CARGNCAT	Noncanonical CArG motif (CC-Wx8-GG) found in the promoter region of DTA1 (AtGA2ox6); A relevant cis element for the response to AGL15 (AGAMOUS-like 15) in vivo	80.00%
Matrix_212	ATHB-12	Not Available	73.49%
Matrix_125	AHL12	Not Available	72.19%
Matrix_354	AHL12	Not Available	69.14%
Matrix_521	AHL20	Not Available	68.89%
Matrix_168	AHL25	Not Available	68.82%
Matrix_185	AHL25	Not Available	67.33%
Matrix_88	AHL12	Not Available	66.49%
Matrix_444	AT1G19485; AT4G17950	Not Available	64.79%
Matrix_32	AHL25	Not Available	63.70%
Matrix_308	INO	Not Available	62.84%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	62.19%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	62.08%
Matrix_341	HMGA	Not Available	62.02%
Matrix_204	WOX13	Not Available	61.77%
Matrix_54	AHL20	Not Available	61.70%
Matrix_46	AT4G21895	Not Available	61.18%
Matrix_259	AT1G50680; AT1G51120	Not Available	61.05%
Motif_298	GMHDLGMVSPB	Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein	60.00%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	60.00%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	59.66%
Matrix_8	KAN1	Not Available	58.53%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	58.42%
Matrix_141	AT3G25990	Not Available	58.29%
Matrix_143	GATA14; GATA6; GATA5	Not Available	58.03%
Matrix_93	YAB5	Not Available	57.97%
Matrix_227	AT1G64620	Not Available	57.91%
Matrix_431	ATHB21; HB-3	Not Available	57.76%
Matrix_81	YAB1	Not Available	57.76%
Matrix_286	GATA7	Not Available	57.74%
Matrix_17	WRKY22	Not Available	57.70%
Matrix_382	AT3G04850	Not Available	57.70%
Matrix_70	GATA26	Not Available	56.90%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	56.88%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	56.46%
Motif_677	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	56.34%
Motif_581	AP1 BS in AP3	The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	56.34%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	56.34%
Matrix_12	EIN3; EIL2	Not Available	56.33%
Matrix_322	NST3; ANAC015; BRN2	Not Available	56.19%
Matrix_142	ZFP8	Not Available	56.05%
Motif_83	CIACADIANLELHC	Region necessary for circadian expression of tomato Lhc gene	55.86%
Matrix_333	GATA3	Not Available	55.59%
Matrix_441	ATHB5	Not Available	55.46%
Matrix_99	DOF4.7	Not Available	55.45%
Matrix_447	RVE1	Not Available	55.26%
Motif_615	MARTBOX	T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)	55.00%
Matrix_152	EIL1; AT5G65100	Not Available	54.99%
Matrix_97	APRR2	Not Available	54.78%
Matrix_271	AT3G16350	Not Available	54.52%
Matrix_226	GATA1	Not Available	54.43%
Matrix_75	WRKY29	Not Available	54.36%
Matrix_442	AT5G62260	Not Available	54.34%
Matrix_328	AT1G76580	Not Available	54.22%
Matrix_181	Dof5.7	Not Available	54.10%
Matrix_491	AT1G68670; AT3G25790	Not Available	54.05%
Matrix_53	MYC3	Not Available	53.86%
Matrix_463	HAT3.1	Not Available	53.83%
Matrix_391	AHL20	Not Available	53.74%
Matrix_206	CUC1; ANAC100	Not Available	53.48%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	53.08%
Matrix_151	ASIL1	Not Available	53.00%
Motif_169	ATHB2 binding site motif	Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	52.93%
Matrix_112	TBP2; TFIID-1	Not Available	52.87%
Matrix_100	AT1G48610	Not Available	52.75%
Motif_656	AG BS in SUP	Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS	52.68%
Matrix_501	DAG2	Not Available	52.57%
Matrix_182	ATHB6	Not Available	52.56%
Matrix_435	ATHB51	Not Available	52.40%
Matrix_483	ICU4	Not Available	52.39%
Matrix_461	ATHB12	Not Available	52.38%
Matrix_37	GATA27	Not Available	52.23%
Matrix_87	AT1G19000	Not Available	52.03%
Matrix_136	SEP3	Not Available	51.98%
Matrix_502	AT3G13040	Not Available	51.94%
Matrix_78	AT3G45610	Not Available	51.92%
Matrix_72	CDF2	Not Available	51.91%
Matrix_384	ATWRKY17	Not Available	51.88%
Matrix_69	AT2G03500	Not Available	51.87%
Matrix_370	WRKY50; WRKY51	Not Available	51.82%
Matrix_195	GATA2; GATA4	Not Available	51.82%
Matrix_489	RAV1	Not Available	51.69%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	51.58%
Matrix_241	HB-1; AT5G44180	Not Available	51.55%
Matrix_434	ARR11	Not Available	51.30%
Matrix_416	ASL5	Not Available	51.26%
Matrix_427	ZAT14	Not Available	51.22%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	51.22%
Matrix_248	ZFP5	Not Available	51.21%
Matrix_114	EPR1; AT3G10113	Not Available	51.17%
Matrix_430	TOE2	Not Available	50.78%
Matrix_59	AT4G00238; AT4G00250	Not Available	50.73%
Matrix_418	KNAT6; KNAT2	Not Available	50.60%
Matrix_157	LHY; RVE2	Not Available	50.51%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	50.44%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	50.44%
Matrix_336	AT5G08520	Not Available	50.34%
Matrix_162	AtPHR1	Not Available	50.13%
Matrix_4	ARR14	Not Available	50.07%
Motif_373	TATABOX1	TATA box; TATA box found in the 5'upstream region of rice alpha-amylase; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation	50.00%
Motif_642	SEF1MOTIF	SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene	50.00%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	50.00%