| Motif_105 | AGL3 binding site motif | The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein | | 66.67% |
| Motif_180 | AGL2 binding site motif | Binding consensus sequence of Arabidopsis AGL2 (AGAMOUS-like 2); AGL2 contains MADS domain; AGL2 binds DNA as a dimer | | 64.17% |
| Motif_6 | AGL1 binding site motif | Binding consensus sequence of Arabidopsis AGL1 (AGAMOUS-like 1); AGL1 contains MADS domain; AGL20 is a MADS domain gene from Arabidopsis that is activated in shoot apical meristem during the transition to flowering; AGL20 is also regulated by the Gibberellin pathway; Complex regulatory net works involving several MADS-genes underlie development of vegetative structures | | 63.74% |
| Matrix_428 | SEP4 | Not Available | | 62.03% |
| Matrix_2 | SEP4 | Not Available | | 61.23% |
| Matrix_310 | AGL3 | The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein | | 61.23% |
| Matrix_417 | SEP4 | Not Available | | 61.23% |
| Motif_547 | AG BS in AP3 | The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 61.11% |
| Matrix_28 | SEP1 | Not Available | | 60.51% |
| Matrix_222 | AGL2 | DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation | | 60.51% |
| Motif_327 | AGAMOUSATCONSENSUS | Binding consensus sequence of Arabidopsis AGAMOUS MADS domain; MCM1 binding-sites in a-mating-type-specific promoters of Saccharomyces cerevisiae show similarities with the binding-site sequence of the AGAMOUS MADS domain; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development; See S000338 | | 60.25% |
| Matrix_358 | AGL15 | Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study | | 56.85% |
| Matrix_386 | AGL1 | DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation | | 56.63% |
| Matrix_121 | SHP1 | Not Available | | 56.63% |
| Matrix_43 | AG | Not Available | | 55.89% |
| Matrix_98 | AG | Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS | | 55.89% |
| Matrix_445 | AG | Not Available | | 55.89% |
| Motif_276 | LREBOX3PSRBCS3 | LRE (light-responsive element) Box III of pea rbcS-3A gene; GT-1 binding | | 55.56% |
| Motif_458 | ELEMENT2GMLBC3 | Element 2 found in the promoter of soybean leghaemoglobin lbc3 gene; Binding site of nuclear extract from soybean nodules; Located at -161 to -176; Element 1 and Element 2 bind to the same nodule specific factor; Element 2 is highly conserved in other soybean lb gene promoter regions | | 55.56% |
| Motif_111 | CArG1 motif in AP3 | CArG1 found in the Arabidopsis APETALA3 (AP3) gene promoter; Binding site of AP3/PI heterodimer; Binding site of AP3/PI heterodimer; Binding site for a positively acting factors; MADS domain transcription factors bind with a consensus sequence called the CArG box; The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 55.56% |
| Motif_185 | CArG2 motif in AP3 | CArG2 found in the Arabidopsis APETALA3 (AP3) gene promoter; Mutations in CArG2 result in a decrease in the expression in petals, but the expression pattern in stamens is unchanged; The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 55.56% |
| Motif_560 | GLUTECOREOS | Core site required for binding of the trans-acting factor in the promoter region of rice glutelin (type 2 glutelin gene family) | | 55.56% |
| Motif_581 | AP1 BS in AP3 | The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects | | 55.56% |
| Matrix_29 | AP1 | Not Available | | 53.45% |
| Motif_110 | AGATCONSENSUS | Binding consensus sequence for the product of the Arabidopsis floral homeotic gene AGAMOUS (AG); AG protein contains a region similar to the DNA binding domain of SRF and MCM1; The consensus sequence contains a CArG box; AG protein is a putative transcription factor for floral genes; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development | | 51.53% |
| Motif_521 | RBCSBOX3PS | rbcS box III; 5' upstream region (-114) of pea rbcS gene; binding with trans factor GT-1; one of GT-1 boxes | | 50.00% |
| Motif_428 | GLUTEBOX2OSGT3 | Box 2 of rice glutelin Gt3 gene family promoter region; See GLUTEBOX1A | | 50.00% |
| Motif_493 | ABFOS | ABF (as-1-like box binding factor) binding site; as-1-like (ASL) box is found at -98 to -79 of RTBV (rice tungro bacilliform virus) promoter; ASL box is required for phloem-specific gene expression of Rice Tungro Bacilliform Virus (RTBV) | | 50.00% |
| Motif_117 | RYREPEAT4 | RY repeat motif; Sph element; seed expression; ABA; Gene: maize C1, wheat Em, rice rab16A, maize Rab17; Transacting factor: VP1 (maize C1); See RYREPEAT2; The RY sequence motif does not play a major role in VP1 or ABA regulation of Em gene in protoplast; VP1 gene is specifically required for expression of the maturation program in seed development | | 50.00% |
| Motif_229 | D2GMAUX28 | D2; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; Located between -703 and -716; A/T-rich sequence | | 50.00% |
| Motif_187 | AT1BOX | AT-1 box (AT-rich element) found in the promoter region of the genes for tobacco chlorophyll a/b binding protein (cab) and small subunit of ribulose-1,5-bisphosphate carboxylase (rbcS); Deletion of a region containing the AT-1 site in the tomato RBCS3A gene strongly inhibited reporter gene expression, whereas AT-1 site in N. plumbaginifolia CAB gene (cab-E) is in a negative element | | 50.00% |
| Motif_175 | BOX2PVCHS15 | Box 2 of bean (P.v.) chs15 promoter; SBF-1 binding site | | 50.00% |
| Motif_247 | BOX3PVCHS15 | Box 3 of bean chs15 promoter; SBF-1 binding site | | 50.00% |
| Motif_294 | HSRENTHSR203J | HSRE(HSR203 responsive element) in tobacco responsible for the marked induction of the HSR203J gene during the HR (hypersensitive response); HSR203J is specifically activated during the early steps of incompatible plant/pathogen interactions | | 50.00% |
| Motif_147 | HDMOTIFPCPR2 | HD (homeodomain) protein target site in parsley pathogenesis-related protein 2 (PR2); A potential in vivo target site | | 50.00% |
| Motif_355 | BOXINTPATPB | Box I found in the tobacco plastid atpB gene promoter; Conserved in several NCII (nonconsensus type II) promoters of plastid genes; Important for the activity of this NCII promoter | | 50.00% |
| Motif_44 | AGL25 | FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis | | 50.00% |
| Motif_23 | 14BPATERD1 | 14 bp region (from -599 to -566) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis | | 50.00% |
| Motif_654 | DR5GMGH3 | DR5; A highly active synthetic auxin response element; Created by site-directed mutations in a natural composite AuxRE found in the soybean GH3 promoter; The DR5 showed greater auxin responsiveness; Binding site of ARF1 | | 50.00% |
| Motif_681 | TDBA12NTCHN50 | TDBA12 binding site found in tobacco basic class I chitinase gene (CHN50); Elicitor response element; TDBA12 belongs to WRKY proteins that appear to be unique to plants; TDBA12 is activated by TMV infection in resistant tobacco plant and by plant defense signal molecule SA | | 50.00% |
| Motif_656 | AG BS in SUP | Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS | | 50.00% |
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