Binding site page : Motif_6


Identifier
Motif_6
Name
AGL1 binding site motif
Description
Binding consensus sequence of Arabidopsis AGL1 (AGAMOUS-like 1); AGL1 contains MADS domain; AGL20 is a MADS domain gene from Arabidopsis that is activated in shoot apical meristem during the transition to flowering; AGL20 is also regulated by the Gibberellin pathway; Complex regulatory net works involving several MADS-genes underlie development of vegetative structures
Number of genes
36
Sequence
NTTDCCWWWWNNGGWAAN
Positional Weight Matrix

Binding site distribution per species

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Binding site distribition per location

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Associated Transcription Factors

Transcription factor Alias Description Orthologs Associated motifs
AT3G58780K-box region and MADS-box transcription factor family proteinP29381;AGAMOUS-like 1View orthologsView associated binding sites

Gene List

Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 36 total, starting on record 1, ending on 20

gene_id species strand chr type
GM08G02490 gma - Gm08 coding
GM09G26550 gma + Gm09 coding
GM13G28700 gma - Gm13 coding
GM14G00555 gma - Gm14 coding
GM15G09750 gma - Gm15 coding
GM20G16025 gma + Gm20 coding
GM16G32080 gma + Gm16 coding
GM06G05670 gma - Gm06 coding
PPE_001G37950 ppe - scaffold_1 coding
PPE_005G14620 ppe - scaffold_5 coding
PPE_002G27930 ppe - scaffold_2 coding
PPE_005G01460 ppe - scaffold_5 coding
AT5G18650 ath + 5 coding
AT5G23260 ath + 5 coding
BR03G09370 bra - A03 coding
BR03G40260 bra - A03 coding
BR04G21090 bra - A04 coding
BR08G18760 bra - A08 coding
BR05G09100 bra + A05 coding
EG0002G10440 egr - scaffold_2 coding

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