Binding site page : Motif_6
- Identifier
- Motif_6
- Name
- AGL1 binding site motif
- Description
- Binding consensus sequence of Arabidopsis AGL1 (AGAMOUS-like 1); AGL1 contains MADS domain; AGL20 is a MADS domain gene from Arabidopsis that is activated in shoot apical meristem during the transition to flowering; AGL20 is also regulated by the Gibberellin pathway; Complex regulatory net works involving several MADS-genes underlie development of vegetative structures
- Number of genes
- 36
- Sequence
- NTTDCCWWWWNNGGWAAN
- Positional Weight Matrix
Binding site distribution per species
Binding site distribition per location
Toolbox
Associated Transcription Factors
Transcription factor | Alias | Description | Orthologs | Associated motifs |
---|---|---|---|---|
AT3G58780 | K-box region and MADS-box transcription factor family protein | P29381;AGAMOUS-like 1 | View orthologs | View associated binding sites |
Gene List
Index of genes with 1 constraints:
- Binding site : Motif_6
Page 1 of 2, showing 20 records out of 36 total, starting on record 1, ending on 20
gene_id | species | strand | chr | type |
---|---|---|---|---|
GM08G02490 | gma | - | Gm08 | coding |
GM09G26550 | gma | + | Gm09 | coding |
GM13G28700 | gma | - | Gm13 | coding |
GM14G00555 | gma | - | Gm14 | coding |
GM15G09750 | gma | - | Gm15 | coding |
GM20G16025 | gma | + | Gm20 | coding |
GM16G32080 | gma | + | Gm16 | coding |
GM06G05670 | gma | - | Gm06 | coding |
PPE_001G37950 | ppe | - | scaffold_1 | coding |
PPE_005G14620 | ppe | - | scaffold_5 | coding |
PPE_002G27930 | ppe | - | scaffold_2 | coding |
PPE_005G01460 | ppe | - | scaffold_5 | coding |
AT5G18650 | ath | + | 5 | coding |
AT5G23260 | ath | + | 5 | coding |
BR03G09370 | bra | - | A03 | coding |
BR03G40260 | bra | - | A03 | coding |
BR04G21090 | bra | - | A04 | coding |
BR08G18760 | bra | - | A08 | coding |
BR05G09100 | bra | + | A05 | coding |
EG0002G10440 | egr | - | scaffold_2 | coding |