Matrix_431 | ATHB21; HB-3 | Not Available | | 79.78% |
Motif_285 | HDZIP2ATATHB2 | Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene | | 72.40% |
Matrix_318 | ATHB16 | Not Available | | 70.80% |
Matrix_441 | ATHB5 | Not Available | | 69.55% |
Motif_142 | HDZIPIIIAT | Ath b-9 HD-Zip (HD-Zip-9), a member of a small family of HD-Zip proteins (HD-ZIP III), in Arabidopsis recognize this sequence | | 69.42% |
Matrix_103 | ATHB1 | The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities | | 68.91% |
Matrix_168 | AHL25 | Not Available | | 68.69% |
Matrix_212 | ATHB-12 | Not Available | | 67.43% |
Matrix_88 | AHL12 | Not Available | | 67.34% |
Motif_624 | ATHB6 binding site motif | Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis | | 67.15% |
Matrix_444 | AT1G19485; AT4G17950 | Not Available | | 66.81% |
Matrix_435 | ATHB51 | Not Available | | 66.52% |
Motif_352 | ATHB5 binding site motif | Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro | | 65.83% |
Matrix_62 | HAT5 | Not Available | | 65.82% |
Motif_277 | ATHB1 binding site motif | Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities | | 64.75% |
Matrix_32 | AHL25 | Not Available | | 64.40% |
Matrix_391 | AHL20 | Not Available | | 63.90% |
Matrix_114 | EPR1; AT3G10113 | Not Available | | 63.11% |
Matrix_461 | ATHB12 | Not Available | | 62.98% |
Matrix_495 | HD-GL2-1; ANL2 | Not Available | | 62.82% |
Matrix_54 | AHL20 | Not Available | | 62.76% |
Motif_169 | ATHB2 binding site motif | Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities | | 62.68% |
Matrix_93 | YAB5 | Not Available | | 62.32% |
Matrix_81 | YAB1 | Not Available | | 62.12% |
Matrix_276 | AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660 | Not Available | | 62.06% |
Matrix_70 | GATA26 | Not Available | | 62.03% |
Matrix_284 | KAN2; KAN3; KAN; KAN4 | Not Available | | 62.02% |
Matrix_141 | AT3G25990 | Not Available | | 61.92% |
Matrix_333 | GATA3 | Not Available | | 61.78% |
Matrix_302 | HAT1; HAT2 | Not Available | | 61.39% |
Matrix_313 | ATMYB65; MYB33 | Not Available | | 61.20% |
Matrix_259 | AT1G50680; AT1G51120 | Not Available | | 60.87% |
Motif_91 | SORLIP4AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 60.45% |
Matrix_181 | Dof5.7 | Not Available | | 60.39% |
Matrix_185 | AHL25 | Not Available | | 60.08% |
Matrix_429 | KAN4 | Not Available | | 60.03% |
Matrix_13 | HAT5 | Not Available | | 59.93% |
Matrix_46 | AT4G21895 | Not Available | | 59.83% |
Matrix_351 | HAT9; ATHB-4; ATHB2; HAT22; HAT14 | Not Available | | 59.57% |
Matrix_182 | ATHB6 | Not Available | | 59.48% |
Matrix_143 | GATA14; GATA6; GATA5 | Not Available | | 59.38% |
Matrix_71 | ATHB7 | Not Available | | 59.16% |
Matrix_341 | HMGA | Not Available | | 59.13% |
Matrix_319 | TEM1 | Not Available | | 59.04% |
Matrix_380 | ATMYR1 | Not Available | | 58.88% |
Motif_131 | P1BS | PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii | | 58.74% |
Matrix_17 | WRKY22 | Not Available | | 58.73% |
Matrix_12 | EIN3; EIL2 | Not Available | | 58.44% |
Matrix_125 | AHL12 | Not Available | | 58.40% |
Matrix_75 | WRKY29 | Not Available | | 58.08% |
Matrix_159 | TEM2 | Not Available | | 57.83% |
Matrix_354 | AHL12 | Not Available | | 57.70% |
Matrix_453 | EIL3 | Not Available | | 57.66% |
Matrix_37 | GATA27 | Not Available | | 57.64% |
Matrix_167 | ZAT6 | Not Available | | 57.61% |
Matrix_347 | WOX14; WOX10 | Not Available | | 57.55% |
Matrix_160 | RVE1 | Not Available | | 57.32% |
Matrix_434 | ARR11 | Not Available | | 57.25% |
Matrix_383 | CCA1 | Not Available | | 57.21% |
Matrix_131 | HDG12; EDT1; GL2; HDG8 | Not Available | | 57.14% |
Matrix_452 | MYB46 | Not Available | | 57.10% |
Matrix_521 | AHL20 | Not Available | | 56.85% |
Matrix_263 | WRKY33; WRKY19; WRKY32 | Not Available | | 56.75% |
Matrix_227 | AT1G64620 | Not Available | | 56.60% |
Matrix_291 | EDF3 | Not Available | | 56.37% |
Matrix_286 | GATA7 | Not Available | | 56.34% |
Matrix_268 | EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105 | Not Available | | 56.29% |
Matrix_4 | ARR14 | Not Available | | 56.21% |
Matrix_204 | WOX13 | Not Available | | 56.20% |
Matrix_423 | AT3G04030 | Not Available | | 56.17% |
Matrix_370 | WRKY50; WRKY51 | Not Available | | 56.12% |
Matrix_328 | AT1G76580 | Not Available | | 56.02% |
Matrix_384 | ATWRKY17 | Not Available | | 55.99% |
Matrix_512 | HAT3 | Not Available | | 55.97% |
Matrix_3 | WRKY48 | Not Available | | 55.96% |
Matrix_8 | KAN1 | Not Available | | 55.94% |
Matrix_505 | GATA8 | Not Available | | 55.83% |
Matrix_207 | WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49 | Not Available | | 55.82% |
Motif_675 | FUS3; ABI3 | Gene regulation during late embryogenesis: the RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product | | 55.69% |
Matrix_210 | ARR1 | Not Available | | 55.66% |
Matrix_178 | HSFB2A | Not Available | | 55.65% |
Motif_18 | 5659BOXLELAT5659 | 56/59 box; A sequence motif shared between the tomato LAT(Late Anther Tomato)56 and LAT59 promoters; Found in -103 to -94 in LAT56 and in -114 to -105 in LAT59; Involved in modulating the activity of the LAT gene promoters in pollen | | 55.51% |
Matrix_303 | ATWOX13 | Not Available | | 55.51% |
Motif_49 | TATAPVTRNALEU | TATA-like motif; A TATA-like sequence found in Phaseolus vulgaris tRNALeu gene promoter; Frequently observed upstream of plant tRNA genes; Found in maize glycolytic glyceraldehyde-3-phospate dehydrogenase 4 (GapC4) gene promoter; Binding site of TATA binding protein (TBP) | | 55.41% |
Matrix_322 | NST3; ANAC015; BRN2 | Not Available | | 55.39% |
Motif_147 | HDMOTIFPCPR2 | HD (homeodomain) protein target site in parsley pathogenesis-related protein 2 (PR2); A potential in vivo target site | | 55.09% |
Motif_677 | AGL22; AGL20; AGL24 | Regulation of floral patterning by flowering time genes | | 54.98% |
Matrix_408 | GATA12 | Not Available | | 54.90% |
Matrix_308 | INO | Not Available | | 54.57% |
Matrix_44 | CUC3; anac046; NAC3; ANAC087; ATNAC6; CUC2 | Not Available | | 54.56% |
Matrix_280 | TCP24; TCP1; BRC2; ATTCP18 | Not Available | | 54.50% |
Motif_642 | SEF1MOTIF | SEF1 (soybean embryo factor 1) binding motif; sequence found in 5'-upstream region (-640; -765) of soybean beta-conglicinin (7S globulin) gene | | 54.29% |
Matrix_392 | ARR2 | Not Available | | 54.14% |
Motif_637 | SARD1; CBP60g | Control of salicylic acid synthesis and systemic acquired resistance by two members of a plant-specific family of transcription factors | | 54.13% |
Matrix_151 | ASIL1 | Not Available | | 54.07% |
Matrix_463 | HAT3.1 | Not Available | | 54.06% |
Matrix_501 | DAG2 | Not Available | | 54.04% |
Matrix_157 | LHY; RVE2 | Not Available | | 54.01% |
Matrix_382 | AT3G04850 | Not Available | | 53.85% |
Matrix_102 | WRKY21 | Not Available | | 53.81% |
Matrix_142 | ZFP8 | Not Available | | 53.80% |
Matrix_442 | AT5G62260 | Not Available | | 53.76% |
Matrix_67 | GLK1 | Not Available | | 53.73% |
Matrix_206 | CUC1; ANAC100 | Not Available | | 53.69% |
Matrix_97 | APRR2 | Not Available | | 53.68% |
Matrix_72 | CDF2 | Not Available | | 53.59% |
Matrix_366 | ARR14 | Not Available | | 53.58% |
Motif_195 | TATABOX4 | TATA box; TATA box found in the 5'upstream region of sweet potato sporamin A gene; TATA box found in beta-phaseolin promoter; sequence and spacing of TATA box elements are critical for accurate initiation | | 53.43% |
Matrix_300 | bZIP68; bZIP16 | Not Available | | 53.42% |
Matrix_296 | GBF2 | Not Available | | 53.38% |
Motif_136 | SEF4MOTIFGM7S | SEF4 binding site; Soybean consensus sequence found in 5'upstream region (-199) of beta-conglycinin (7S globulin) gene (Gmg17.1); Binding with SEF4 (soybean embryo factor 4) | | 53.22% |
Matrix_491 | AT1G68670; AT3G25790 | Not Available | | 53.19% |
Matrix_195 | GATA2; GATA4 | Not Available | | 53.19% |
Matrix_53 | MYC3 | Not Available | | 53.14% |
Matrix_502 | AT3G13040 | Not Available | | 53.14% |
Motif_408 | EVENINGAT | Evening element found 46 times in the promoters of 31 cycling genes in Arabidopsis thaliana; Required for circadian control of gene expression; EE (evening element) motif; Also found in the promoter of the Solanum melongena gene encoding cysteine protease, and identified as cis-element for its circadian regulation;Orchestrated transcription of key pathways in Arabidopsis by the circadian clock | | 53.12% |
Matrix_226 | GATA1 | Not Available | | 53.07% |
Matrix_9 | AT5G04760 | Not Available | | 53.06% |
Matrix_14 | ZCW32; AT5G62610 | Not Available | | 52.99% |
Matrix_220 | WRKY18 | Not Available | | 52.65% |
Matrix_66 | AtLEC2 | Genes directly regulated by LEAFY COTYLEDON2 provide insight into the control of embryo maturation and somatic embryogenesis | | 52.62% |
Matrix_21 | HSFC1 | Not Available | | 52.61% |
Motif_446 | C1MOTIFZMBZ2 | C1-motif; Similar to Myb-box; Found in the promoter region of maize Bronze2 ( glutathione S-transferase) gene; C1 binding; C1-motif and R-motif were shown to be important for full R and C1 activation of the Bz2 promoter | | 52.45% |
Matrix_255 | cdf3 | Not Available | | 52.42% |
Motif_235 | C8GCARGAT | Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15) | | 52.39% |
Matrix_376 | WRKY45 | Not Available | | 52.30% |
Motif_631 | MARARS | ARS element; Motif found in SAR (MAR) | | 52.22% |
Matrix_152 | EIL1; AT5G65100 | Not Available | | 52.16% |
Matrix_59 | AT4G00238; AT4G00250 | Not Available | | 52.12% |
Matrix_99 | DOF4.7 | Not Available | | 51.99% |
Matrix_240 | AT4G29000 | Not Available | | 51.98% |
Motif_500 | D1GMAUX28 | D1; DNase I protected sequence found in the soybean auxin responsive gene, Aux28, promoter; D1 and D4 share a very similar core sequence TAGTXXCTGT and TAGTXCTGT, respectively; D1/D4-like sequence were identified in several other auxin-responsive genes; Binding site of GmGT-2 which is the GT-2 family of transcription factors; GmGT-2 are down-regulated by light in a phytochrome-dependent manner | | 51.98% |
Matrix_346 | AtMYB70; MYB73 | Not Available | | 51.98% |
Matrix_293 | WRKY38 | Not Available | | 51.93% |
Motif_284 | GT-2 | DNA binding factor GT-2 from Arabidopsis | | 51.89% |
Matrix_416 | ASL5 | Not Available | | 51.85% |
Motif_297 | Bellringer/replumless/pennywise BS1 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | | 51.85% |
Matrix_306 | TGA1 | TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG | | 51.82% |
Matrix_38 | SPL14 | Not Available | | 51.60% |
Matrix_317 | AT1G06070; AT2G31370; AT2G40620 | Not Available | | 51.59% |
Matrix_69 | AT2G03500 | Not Available | | 51.58% |
Motif_361 | SORLREP4AT | one of Sequences Over-Represented in Light-Repressed Promoters (SORLREPs) in Arabidopsis; Computationally identified phyA-repressed motifs; Common in circadian-regulated promoters; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 51.56% |
Matrix_361 | AT1G25550 | Not Available | | 51.49% |
Motif_673 | Bellringer/replumless/pennywise BS2 IN AG | Repression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems | | 51.33% |
Motif_87 | AGL22; AGL20; AGL24 | Regulation of floral patterning by flowering time genes | | 51.33% |
Matrix_457 | TGA2 | Not Available | | 51.10% |
Motif_422 | SP8BFIBSP8BIB | One of SPBF binding site (SP8b); Found at -330, -220, and -200 of gSPO-B1 (sporamin) gene, and also at -80 of gB-Amy (beta-amylase) gene; SP8BF recognizes both SP8a and SP8b sequences; See also SP8BFIBSP8AIB; SP8BF activity is also found in tobacco; SP8b found in the 5' upstream region of three differnt genes coding for sporamin and beta-amylase; Binding site of SPF1; SPF1 also binds to the SP8b | | 51.09% |
Matrix_109 | GBF3 | Not Available | | 51.03% |
Matrix_16 | AT3G04450; PHL1 | Not Available | | 50.98% |
Matrix_447 | RVE1 | Not Available | | 50.91% |
Matrix_415 | WRKY27 | Not Available | | 50.88% |
Motif_442 | GT2OSPHYA | GT-2 (a rice nuclear protein) binding site in a rice phyA promoter; phyA gene are transcriptionaly repressed in response to light; One of GT elements;The HMG-1/Y protein PF1 stimulates binding of the GT-2 to PHYA gene promoter | | 50.88% |
Matrix_425 | TIFY2A | Not Available | | 50.86% |
Matrix_489 | RAV1 | Not Available | | 50.84% |
Matrix_523 | FUSCA3 | Not Available | | 50.83% |
Matrix_513 | SOL1; TSO1; TCX2 | Not Available | | 50.75% |
Matrix_51 | LFY | Not Available | | 50.64% |
Matrix_205 | AGL15 | Not Available | | 50.53% |
Matrix_324 | AT2G01060 | Not Available | | 50.47% |
Matrix_162 | AtPHR1 | Not Available | | 50.38% |
Matrix_231 | HDG2; HDG3; ATML1; HB-7 | Not Available | | 50.37% |
Matrix_508 | APL; AT3G12730; AT3G24120; UNE16 | Not Available | | 50.28% |
Matrix_120 | BEE2 | Not Available | | 50.27% |
Matrix_241 | HB-1; AT5G44180 | Not Available | | 50.22% |
Motif_116 | INRNTPSADB | Inr (initiator) elements found in the tobacco psaDb gene promoter without TATA boxes; Light-responsive transcription of psaDb depends on Inr, but not TATA box | | 50.13% |
Matrix_63 | ARR10 | Not Available | | 50.09% |
Motif_34 | LECPLEACS2 | Core element in LeCp (tomato Cys protease) binding cis-element (from -715 to -675) in LeAcs2 gene | | 50.09% |
Matrix_411 | DOF5.6 | Not Available | | 50.01% |