PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_290
Name: AP2
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_507	TCP3	Not Available	70.93%
Matrix_36	RAV1_1	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	67.61%
Matrix_144	AT5G08330; AT5G23280	Not Available	67.25%
Matrix_266	TCP16	Determinants of the DNA binding specificity of class I and class II TCP transcription factors	67.04%
Matrix_412	GL1	Not Available	66.59%
Matrix_208	AP1	Not Available	65.96%
Matrix_216	TCP16	Not Available	65.85%
Matrix_40	TCP2	Not Available	65.78%
Matrix_148	WRKY60	Not Available	65.08%
Matrix_42	AT2G45680	Not Available	64.19%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	63.53%
Matrix_220	WRKY18	Not Available	63.45%
Matrix_196	TCP20; AT5G41030	Not Available	63.23%
Matrix_370	WRKY50; WRKY51	Not Available	63.01%
Matrix_232	TCP23	Not Available	62.78%
Matrix_348	AT5G51910	Not Available	62.76%
Matrix_3	WRKY48	Not Available	62.70%
Matrix_418	KNAT6; KNAT2	Not Available	62.57%
Matrix_102	WRKY21	Not Available	62.44%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	62.34%
Matrix_277	RAP2.6	Not Available	62.02%
Matrix_470	WRKY18	Not Available	61.96%
Matrix_297	TCP15	Not Available	61.94%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	61.92%
Matrix_141	AT3G25990	Not Available	61.88%
Matrix_463	HAT3.1	Not Available	61.36%
Matrix_162	AtPHR1	Not Available	61.33%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	61.29%
Matrix_407	AP1	Not Available	61.21%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	61.14%
Matrix_203	GATA9; GATA12	Not Available	61.06%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	60.87%
Matrix_294	MEE35	Not Available	60.86%
Matrix_363	RAP2.3	Not Available	60.77%
Matrix_384	ATWRKY17	Not Available	60.67%
Matrix_195	GATA2; GATA4	Not Available	60.58%
Matrix_355	ERF10; ERF11	Not Available	60.29%
Matrix_69	AT2G03500	Not Available	60.28%
Motif_94	UP1ATMSD	Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	60.27%
Matrix_75	WRKY29	Not Available	60.21%
Matrix_17	WRKY22	Not Available	59.98%
Matrix_453	EIL3	Not Available	59.92%
Matrix_70	GATA26	Not Available	59.89%
Matrix_491	AT1G68670; AT3G25790	Not Available	59.88%
Matrix_361	AT1G25550	Not Available	59.86%
Matrix_50	ATERF14; AT5G43410	Not Available	59.86%
Matrix_224	ERF1	Not Available	59.86%
Matrix_82	TCP17	Not Available	59.82%
Matrix_16	AT3G04450; PHL1	Not Available	59.73%
Matrix_452	MYB46	Not Available	59.73%
Matrix_167	ZAT6	Not Available	59.67%
Matrix_502	AT3G13040	Not Available	59.64%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	59.56%
Matrix_281	TCP13	Not Available	59.24%
Matrix_324	AT2G01060	Not Available	59.01%
Matrix_186	FHY3	Not Available	59.01%
Matrix_57	WIN1; SHN3; SHN2	Not Available	58.95%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	58.82%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	58.80%
Matrix_328	AT1G76580	Not Available	58.67%
Matrix_253	ETT	Not Available	58.62%
Matrix_197	NAP	Not Available	58.55%
Matrix_226	GATA1	Not Available	58.46%
Matrix_94	TCP5	Not Available	58.44%
Matrix_236	CCA1	Not Available	58.21%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	58.19%
Matrix_408	GATA12	Not Available	58.17%
Matrix_500	WRKY43	Not Available	57.96%
Matrix_119	RRTF1	Not Available	57.83%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	57.74%
Matrix_61	ATCBF3	Not Available	57.62%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	57.60%
Matrix_92	AT1G33760	Not Available	57.56%
Matrix_52	ZAT18	Not Available	57.44%
Matrix_130	TCP16	Not Available	57.42%
Matrix_286	GATA7	Not Available	57.39%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	57.38%
Matrix_288	RAP2.3	Not Available	57.24%
Matrix_249	WRKY11	Not Available	57.19%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	57.18%
Matrix_333	GATA3	Not Available	57.14%
Matrix_91	CRF3	Not Available	57.11%
Matrix_101	ERF5	Not Available	56.90%
Matrix_143	GATA14; GATA6; GATA5	Not Available	56.77%
Matrix_37	GATA27	Not Available	56.76%
Matrix_396	AP3	Not Available	56.71%
Matrix_169	E2F1	Not Available	56.48%
Matrix_230	ARR11	Not Available	56.45%
Matrix_415	WRKY27	Not Available	56.44%
Matrix_419	TGA9; PAN; TGA6; bZIP65	Not Available	56.41%
Matrix_22	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	56.41%
Matrix_420	ANAC58	Not Available	56.40%
Matrix_287	ERF2	Not Available	56.33%
Matrix_193	RAV1	Not Available	56.21%
Matrix_265	NGA3	Not Available	56.21%
Matrix_199	AT1G69170; SPL9; SPL15; SPL13A; SPL13B	Not Available	56.20%
Matrix_481	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	56.18%
Matrix_151	ASIL1	Not Available	56.09%
Matrix_343	AT2G33710	Not Available	56.06%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	56.04%
Matrix_423	AT3G04030	Not Available	55.98%
Matrix_373	E2FE	Not Available	55.86%
Matrix_261	ATERF-1	Not Available	55.77%
Matrix_97	APRR2	Not Available	55.69%
Matrix_493	AT1G22985; AT1G71130	Not Available	55.68%
Matrix_128	TGA2	Not Available	55.58%
Matrix_433	ATERF1	Not Available	55.37%
Matrix_321	HRD	Not Available	55.32%
Matrix_257	NAC050; ANAC051; anac057; NAC2	Not Available	55.26%
Matrix_378	ATERF1	Not Available	55.21%
Matrix_259	AT1G50680; AT1G51120	Not Available	55.18%
Matrix_409	DEAR3	Not Available	55.10%
Matrix_152	EIL1; AT5G65100	Not Available	55.09%
Matrix_282	bZIP60	Not Available	55.06%
Matrix_362	DEAR3	Not Available	54.98%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	54.90%
Matrix_85	SPL5	Not Available	54.82%
Matrix_234	RAP2.3	Not Available	54.77%
Matrix_311	TGA1	Not Available	54.67%
Matrix_450	SPL7	Not Available	54.66%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	54.61%
Matrix_462	ATERF-8	Not Available	54.54%
Matrix_221	SPL7	Not Available	54.53%
Matrix_271	AT3G16350	Not Available	54.49%
Matrix_350	ARR14	Not Available	54.47%
Matrix_432	AT1G77920	Not Available	54.44%
Matrix_308	INO	Not Available	54.43%
Matrix_138	RRTF1	Not Available	54.40%
Matrix_201	AT1G74840	Not Available	54.34%
Matrix_499	ARR18	Not Available	54.33%
Matrix_406	ATERF-7	Not Available	54.21%
Motif_109	PREMOTIFNPCABE	Motif sequence repeated many times in two positive regulatory elements, PRE1 (-1554 to -1182) and PRE2 (-747 to -516) found far upstream in the tobacco CAB gene (cab-E) promoter; Confer maximum levels of photoregulated expression	54.16%
Matrix_165	KNAT1	Not Available	54.12%
Motif_619	SITEIIBOSPCNA	Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes	54.08%
Matrix_12	EIN3; EIL2	Not Available	53.98%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	53.93%
Matrix_505	GATA8	Not Available	53.83%
Matrix_434	ARR11	Not Available	53.79%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	53.78%
Matrix_188	SPL4	Not Available	53.73%
Matrix_244	DREB2C	Not Available	53.71%
Matrix_227	AT1G64620	Not Available	53.67%
Matrix_494	OBP4	Not Available	53.67%
Matrix_228	TGA2	Not Available	53.66%
Matrix_59	AT4G00238; AT4G00250	Not Available	53.63%
Matrix_394	DREB_U	Not Available	53.57%
Matrix_93	YAB5	Not Available	53.56%
Matrix_393	REM1	Not Available	53.54%
Matrix_479	TOE1	Not Available	53.52%
Matrix_430	TOE2	Not Available	53.51%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	53.47%
Motif_256	RHE_element	Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns	53.44%
Matrix_6	AT1G70000	Not Available	53.41%
Matrix_77	PRR5	Not Available	53.35%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	53.23%
Matrix_392	ARR2	Not Available	53.21%
Matrix_275	ZAP1	Characterization of a zinc-dependent transcriptional activator from Arabidopsis	53.16%
Matrix_283	GATA15; GATA17; AT4G16141; GATA22; GATA23; GATA16; GNC	Not Available	53.16%
Matrix_520	ARR14	Not Available	53.16%
Matrix_23	ANAC46	Not Available	53.12%
Matrix_385	DEAR4	Not Available	52.94%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	52.90%
Motif_650	SITEIIAOSPCNA	Site IIa of rice PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See AUXREPSIAA4	52.81%
Matrix_254	MYB52	Not Available	52.80%
Matrix_38	SPL14	Not Available	52.79%
Matrix_87	AT1G19000	Not Available	52.74%
Matrix_322	NST3; ANAC015; BRN2	Not Available	52.68%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	52.64%
Matrix_448	ATERF6	Not Available	52.62%
Matrix_327	ARR11	Not Available	52.61%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	52.61%
Motif_379	ABRECE1HVA22	CE1(coupling element 1) of barley HVA22 gene; possible binding site for nuclear bZIP protein; ABA responsive complex consists of a G-box, namely ABRE3 (GCCACGTACA), and CE1	52.60%
Matrix_447	RVE1	Not Available	52.58%
Matrix_104	PI	Not Available	52.46%
Matrix_55	PIF3	Not Available	52.43%
Matrix_184	AGL15	Not Available	52.39%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	52.31%
Motif_31	UPRE1AT	ERSEII-like sequence found in the plant UPRE (unfolded protein response element) in Arabidopsis thaliana; Either of ERSEII or XBP1 binding sites is essential and sufficient for the UPR	52.29%
Matrix_99	DOF4.7	Not Available	52.28%
Matrix_146	ORA47	Not Available	52.17%
Matrix_473	RRTF1	Not Available	52.11%
Matrix_81	YAB1	Not Available	52.01%
Matrix_439	AP3	Not Available	51.98%
Motif_264	GCBP2ZMGAPC4	Binding site of tobacco nuclear factor (GCBP-2) found in the maize GapC4 (Glyceraldehyde-3-phosphate dehydrogenase 4) gene promoter; Located between -293 and -285	51.90%
Matrix_477	RAV1	Not Available	51.89%
Matrix_467	RAV1	Not Available	51.89%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	51.89%
Motif_52	GATA-1	Arabidopsis thaliana GATA factors: organisation, expression and DNA-binding characteristics	51.89%
Matrix_421	GLK1	Not Available	51.88%
Matrix_122	ABF1; AREB2	Not Available	51.88%
Motif_99	DREB1A; DREB1C; DREB1B	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit	51.82%
Matrix_272	DEAR4	Not Available	51.80%
Motif_90	GT1MOTIFPSRBCS	GT-1 motif; Consensus sequence of rbcS BOX II, III, II', III'; GT-1 box; 5' upstream region (-151) of pea (P.s.) rbcS gene; binding with trans factor GT-1; See GT1CORE	51.80%
Matrix_427	ZAT14	Not Available	51.78%
Matrix_67	GLK1	Not Available	51.73%
Matrix_252	RAP2.6	Not Available	51.70%
Matrix_171	LBD3; LBD4	Not Available	51.67%
Matrix_80	BIM1	Not Available	51.66%
Matrix_273	ANAC55	Not Available	51.58%
Matrix_504	WRKY40	Not Available	51.55%
Matrix_120	BEE2	Not Available	51.54%
Matrix_153	AP2	Not Available	51.42%
Motif_592	WRKY43; WRKY38; WRKY26	Arabidopsis WRKY38 and WRKY62 transcription factors interact with histone deacetylase 19 in basal defense. Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function	51.26%
Matrix_210	ARR1	Not Available	51.22%
Matrix_106	AT5G47390	Not Available	51.22%
Matrix_341	HMGA	Not Available	51.11%
Matrix_212	ATHB-12	Not Available	51.07%
Matrix_166	TGA4	Not Available	51.06%
Motif_64	ABAREG2	Motif related to ABA regulation; Gene: sunflower helianthinin; transacting factor: bZIP	50.99%
Matrix_4	ARR14	Not Available	50.90%
Matrix_209	RAP2.6	Not Available	50.90%
Matrix_482	AT2G25650; AT4G00270	Not Available	50.82%
Matrix_142	ZFP8	Not Available	50.81%
Matrix_306	TGA1	TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG	50.79%
Matrix_489	RAV1	Not Available	50.77%
Motif_497	ARE1	ARE (antioxidant response element); antioxidant response element of rat glutathione S-transferase Ya subunit, and rat NAD(P)H:quinone reductase genes	50.74%
Motif_648	ARE2	ARE (antioxidant response element); antioxidant response element of mouse metallothionein-I (MT-I) gene; Consensus sequence of mouse MT-I and MT-II genes, and MT genes isolated from rat, hamster, human, sheep, chicken, Drosophila melanogaster, C. elegans; See ARE1	50.64%
Matrix_109	GBF3	Not Available	50.61%
Motif_385	GGTCCCATGMSAUR	Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness	50.59%
Matrix_457	TGA2	Not Available	50.58%
Matrix_518	AT2G21230	Not Available	50.41%
Matrix_237	MYB55	Not Available	50.39%
Matrix_404	OBP4	Not Available	50.38%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	50.27%
Matrix_369	AT2G18300	Not Available	50.19%
Matrix_382	AT3G04850	Not Available	50.16%
Matrix_389	ILR3	Not Available	50.16%
Motif_203	bZIP23; bZIP19	Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency	50.15%
Matrix_465	MYC4	Not Available	50.08%
Motif_118	CAATBOX2	CAAT box found in the 5' upstream region (-80) of many eukaryotic genes; GGC(or T)CAATCT	50.06%
Motif_333	GLUTEBP1OS	Glutelin BP-1; Binding site in the promoter region of glutelin Gt3 gene family of nuclear factor (PB-1); PB-1 is observed only in nuclear extract of developing seeds	50.05%
Matrix_374	AT5G07580; AT5G61590	Not Available	50.04%
Matrix_366	ARR14	Not Available	50.02%