PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_196
Name: TCP20; AT5G41030
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_297	TCP15	Not Available	71.05%
Matrix_454	AT1G77200; ATERF38; AT4G16750; AT5G52020	Not Available	70.63%
Motif_94	UP1ATMSD	Up1 motif found in 162 of the 1184 up-regulated genes after main stem decapitation in Arabidopsis	69.26%
Matrix_61	ATCBF3	Not Available	68.36%
Matrix_232	TCP23	Not Available	67.55%
Matrix_409	DEAR3	Not Available	66.99%
Matrix_59	AT4G00238; AT4G00250	Not Available	66.88%
Matrix_190	ATERF1	Not Available	65.66%
Matrix_50	ATERF14; AT5G43410	Not Available	65.54%
Matrix_507	TCP3	Not Available	65.19%
Matrix_343	AT2G33710	Not Available	64.98%
Matrix_92	AT1G33760	Not Available	64.95%
Matrix_288	RAP2.3	Not Available	64.90%
Matrix_234	RAP2.3	Not Available	64.82%
Matrix_280	TCP24; TCP1; BRC2; ATTCP18	Not Available	64.66%
Matrix_169	E2F1	Not Available	64.47%
Matrix_326	AT5G07310; Rap2.6L; AT5G61890	Not Available	64.43%
Matrix_452	MYB46	Not Available	64.39%
Matrix_395	AT1G19210; ORA47; AT4G31060; AT5G21960	Not Available	64.38%
Matrix_272	DEAR4	Not Available	64.17%
Matrix_316	WRKY15; WRKY39; WRKY7; WRKY74	Not Available	64.02%
Matrix_12	EIN3; EIL2	Not Available	63.76%
Matrix_287	ERF2	Not Available	63.38%
Matrix_355	ERF10; ERF11	Not Available	63.28%
Matrix_314	WRKY65; WRKY14; WRKY35; WRKY69; WRKY16; ATWRKY52	Not Available	63.11%
Matrix_146	ORA47	Not Available	63.05%
Matrix_249	WRKY11	Not Available	62.65%
Matrix_101	ERF5	Not Available	62.62%
Matrix_91	CRF3	Not Available	62.61%
Matrix_244	DREB2C	Not Available	62.61%
Matrix_500	WRKY43	Not Available	62.34%
Matrix_151	ASIL1	Not Available	62.31%
Matrix_473	RRTF1	Not Available	62.24%
Matrix_294	MEE35	Not Available	62.10%
Matrix_321	HRD	Not Available	62.09%
Matrix_394	DREB_U	Not Available	61.80%
Matrix_406	ATERF-7	Not Available	61.68%
Matrix_252	RAP2.6	Not Available	61.61%
Matrix_377	AT1G75490; DREB2C; AT2G40350; AT5G18450	Not Available	61.50%
Matrix_433	ATERF1	Not Available	61.35%
Matrix_281	TCP13	Not Available	60.97%
Matrix_493	AT1G22985; AT1G71130	Not Available	60.97%
Matrix_109	GBF3	Not Available	60.96%
Matrix_52	ZAT18	Not Available	60.85%
Matrix_3	WRKY48	Not Available	60.84%
Matrix_378	ATERF1	Not Available	60.82%
Matrix_374	AT5G07580; AT5G61590	Not Available	60.73%
Motif_256	RHE_element	Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns	60.53%
Matrix_363	RAP2.3	Not Available	60.50%
Matrix_216	TCP16	Not Available	60.48%
Matrix_448	ATERF6	Not Available	60.43%
Matrix_385	DEAR4	Not Available	60.31%
Matrix_462	ATERF-8	Not Available	60.26%
Matrix_171	LBD3; LBD4	Not Available	60.24%
Motif_385	GGTCCCATGMSAUR	Sequence found in NDE element in Soybean SAUR (Small Auxin-Up RNA) 15A gene promoter; Involved in auxin responsiveness	60.19%
Matrix_57	WIN1; SHN3; SHN2	Not Available	60.03%
Matrix_17	WRKY22	Not Available	60.01%
Matrix_141	AT3G25990	Not Available	59.83%
Matrix_80	BIM1	Not Available	59.77%
Matrix_110	ATABI4; AT3G57600	Not Available	59.60%
Matrix_263	WRKY33; WRKY19; WRKY32	Not Available	59.57%
Matrix_82	TCP17	Not Available	59.55%
Matrix_268	EMB2749; VND5; SMB; VND1; ANAC076; NAC101; ANAC105	Not Available	59.49%
Motif_99	DREB1A; DREB1C; DREB1B	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression;Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit	59.48%
Matrix_94	TCP5	Not Available	59.35%
Matrix_261	ATERF-1	Not Available	59.29%
Matrix_75	WRKY29	Not Available	59.26%
Matrix_331	GBF1	Not Available	59.25%
Matrix_266	TCP16	Determinants of the DNA binding specificity of class I and class II TCP transcription factors	58.94%
Matrix_197	NAP	Not Available	58.91%
Matrix_224	ERF1	Not Available	58.72%
Matrix_380	ATMYR1	Not Available	58.55%
Matrix_463	HAT3.1	Not Available	58.46%
Motif_393	AUXREPSIAA4	AuxRE (Auxine responsive element ) of pea PS-IAA4/5 gene; Indoleacetic acid-inducible genes; domain A; TGA1a is preferentially expressed in root tip meristems; TGA1a may contribute to the expression of GST isoenzymes, especially in root tip meristems	58.42%
Matrix_370	WRKY50; WRKY51	Not Available	58.25%
Matrix_38	SPL14	Not Available	58.23%
Matrix_415	WRKY27	Not Available	58.21%
Matrix_202	WRKY71; WRKY28; WRKY8	Not Available	58.17%
Motif_636	AMMORESVDCRNIA1	Motif (VD) found in the Chlamydomonas Nia1 gene promoter; Located between -33 and -8; Involved in Nia1 transcription activation	57.72%
Matrix_26	ATMYB3; MYB24	Not Available	57.50%
Matrix_253	ETT	Not Available	57.46%
Matrix_384	ATWRKY17	Not Available	57.37%
Matrix_362	DEAR3	Not Available	57.30%
Matrix_277	RAP2.6	Not Available	56.91%
Matrix_102	WRKY21	Not Available	56.84%
Matrix_138	RRTF1	Not Available	56.82%
Matrix_333	GATA3	Not Available	56.81%
Matrix_256	IXR11; KNAT5; KNAT4; KNAT3	Not Available	56.80%
Matrix_296	GBF2	Not Available	56.61%
Matrix_515	ddf2; ATCBF3; CBF1; CBF4	Not Available	56.47%
Matrix_144	AT5G08330; AT5G23280	Not Available	56.14%
Matrix_154	AT1G22190; AT1G36060; AT1G64380; RAP2.4; AT2G20880; AT2G22200; AT4G13620; AT4G28140; AT4G39780; AT5G65130	Not Available	56.12%
Matrix_418	KNAT6; KNAT2	Not Available	56.06%
Matrix_427	ZAT14	Not Available	56.06%
Matrix_207	WRKY10; WRKY57; AT2G44745; ATWRKY13; WRKY49	Not Available	56.02%
Matrix_410	TOE2	Not Available	56.02%
Matrix_221	SPL7	Not Available	55.94%
Matrix_290	AP2	Not Available	55.88%
Matrix_348	AT5G51910	Not Available	55.83%
Matrix_70	GATA26	Not Available	55.80%
Matrix_300	bZIP68; bZIP16	Not Available	55.71%
Matrix_58	WRKY55; ATWRKY54; WRKY46; WRKY70; AtWRKY41; WRKY53; WRKY30	Not Available	55.52%
Matrix_484	ATERF13	Not Available	55.50%
Matrix_188	SPL4	Not Available	55.42%
Matrix_259	AT1G50680; AT1G51120	Not Available	55.35%
Matrix_155	RAP2.6; ERF110; ABR1	Not Available	55.30%
Matrix_317	AT1G06070; AT2G31370; AT2G40620	Not Available	55.22%
Motif_619	SITEIIBOSPCNA	Site IIb of rice PCNA (proliferating cell nuclear antigen) gene; Found at -178 to -169; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes	54.91%
Matrix_97	APRR2	Not Available	54.87%
Matrix_40	TCP2	Not Available	54.81%
Matrix_402	TOE1	Not Available	54.75%
Motif_395	RHE_element	Functional Conservation of a Root Hair Cell-Specific cis-Element in Angiosperms with Different Root Hair Distribution Patterns	54.54%
Matrix_45	DRN	Not Available	54.50%
Matrix_360	ORA59	Not Available	54.47%
Matrix_148	WRKY60	Not Available	54.38%
Matrix_142	ZFP8	Not Available	54.13%
Matrix_308	INO	Not Available	54.10%
Matrix_322	NST3; ANAC015; BRN2	Not Available	54.04%
Matrix_42	AT2G45680	Not Available	54.03%
Matrix_389	ILR3	Not Available	53.91%
Motif_118	CAATBOX2	CAAT box found in the 5' upstream region (-80) of many eukaryotic genes; GGC(or T)CAATCT	53.84%
Matrix_504	WRKY40	Not Available	53.83%
Matrix_295	ERF1	Not Available	53.75%
Matrix_423	AT3G04030	Not Available	53.72%
Matrix_220	WRKY18	Not Available	53.68%
Matrix_373	E2FE	Not Available	53.55%
Matrix_393	REM1	Not Available	53.48%
Matrix_312	ARF11; MP; ARF6; IAA21; ARF8; ARF4	Not Available	53.31%
Matrix_119	RRTF1	Not Available	53.31%
Matrix_243	RAP2.12; RAP2.2	Not Available	53.17%
Matrix_143	GATA14; GATA6; GATA5	Not Available	53.02%
Matrix_399	TGA1	Not Available	53.02%
Motif_50	AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses	52.97%
Matrix_206	CUC1; ANAC100	Not Available	52.74%
Motif_60	AtERF-4; AtERF-3	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	52.74%
Matrix_78	AT3G45610	Not Available	52.69%
Matrix_334	AT3G23230	Not Available	52.65%
Matrix_69	AT2G03500	Not Available	52.63%
Motif_371	DRE-like promoter motif	The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses	52.53%
Matrix_147	ERF3; AT1G80580	Not Available	52.52%
Matrix_183	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	52.44%
Matrix_120	BEE2	Not Available	52.36%
Matrix_99	DOF4.7	Not Available	52.35%
Matrix_503	AT2G37430; AT3G53600	Not Available	52.13%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	52.09%
Matrix_379	RHL41	Not Available	52.08%
Matrix_472	ZN_C2_H2	Not Available	52.08%
Matrix_436	AT3G49930; AZF1	Not Available	52.05%
Matrix_456	bZIP60	Not Available	51.88%
Matrix_446	LBD16	Not Available	51.88%
Motif_37	AtERF-4	Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression	51.86%
Motif_144	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems;Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	51.86%
Motif_107	O2F2BE2S1	opaque-2 recognition site F2 in Bertholletia excelsa (Brazil nut tree) 2S storage protein gene (be2S1); O2 protein binds to F1, F2 and F3 sequences of be2S1 promoter; F2 is a new O2-binding sequence related to the O2 target sites of the Coix alpha-coxin, the maize b-32 genes and the AP-1 pseudopalindrome	51.83%
Matrix_152	EIL1; AT5G65100	Not Available	51.81%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	51.76%
Motif_509	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	51.67%
Matrix_307	RGL2; RGL3	Not Available	51.65%
Matrix_128	TGA2	Not Available	51.63%
Motif_402	AtTINY2	Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana	51.62%
Matrix_491	AT1G68670; AT3G25790	Not Available	51.56%
Matrix_325	WRKY4; WRKY3; WRKY58; ATWRKY34; WRKY20; ATWRKY2	Not Available	51.55%
Matrix_193	RAV1	Not Available	51.53%
Matrix_265	NGA3	Not Available	51.53%
Matrix_176	MYB98	Not Available	51.47%
Matrix_284	KAN2; KAN3; KAN; KAN4	Not Available	51.43%
Matrix_323	BIM3	Not Available	51.42%
Matrix_164	AT1G02030; AT2G45120; AZF2; AT3G60580	Not Available	51.29%
Matrix_336	AT5G08520	Not Available	51.28%
Matrix_344	ATERF15; AT4G18450	Not Available	51.26%
Matrix_405	DREB2C	Not Available	51.25%
Matrix_292	FTQ4	Not Available	51.22%
Motif_368	CBF1 BS in cor15a	Determinants in the sequence specific binding of two plant transcription factors, CBF1 and NtERF2, to the DRE and GCC motifs	51.12%
Matrix_86	CRF5; CRF6; CRF4	Not Available	51.11%
Matrix_517	ERF12	Not Available	51.10%
Matrix_158	AT1G03040; LRL1; UNE12; LRL2; LRL3	Not Available	51.07%
Matrix_198	STZ; C2H2; AZF3	Not Available	51.02%
Matrix_328	AT1G76580	Not Available	50.97%
Matrix_416	ASL5	Not Available	50.93%
Matrix_73	DEAR3; RAP2.9; RAP2.10	Not Available	50.86%
Motif_602	E2Fc; E2Fd	The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants	50.86%
Matrix_56	BZIP17; BZIP28; BZIP49	Not Available	50.86%
Matrix_311	TGA1	Not Available	50.86%
Matrix_330	MYC2; TT8	Not Available	50.84%
Matrix_293	WRKY38	Not Available	50.76%
Matrix_502	AT3G13040	Not Available	50.68%
Matrix_465	MYC4	Not Available	50.68%
Matrix_126	RBE	Not Available	50.54%
Matrix_41	anac058	Not Available	50.53%
Matrix_341	HMGA	Not Available	50.48%
Motif_650	SITEIIAOSPCNA	Site IIa of rice PCNA (proliferating cell nuclear antigen) gene; Found at -197 to -188; Binding site for two nuclear proteins, PCF1 and PCF2; Suggested to be involved in meristematic tissue-specific expression; Resemble the conserved motif (T/GGTCCCAT) found in promoter regions of auxin-regulated genes; See AUXREPSIAA4	50.47%
Matrix_37	GATA27	Not Available	50.47%
Motif_684	MNF1ZMPPC1	MNF1 binding site in maize Ppc1 (phosphoenolpyruvate carboxylase) gene promoter; Involved in light induction	50.45%
Matrix_457	TGA2	Not Available	50.45%
Matrix_226	GATA1	Not Available	50.36%
Matrix_432	AT1G77920	Not Available	50.35%
Matrix_420	ANAC58	Not Available	50.31%
Matrix_421	GLK1	Not Available	50.30%
Matrix_235	WRKY67; WRKY64; WRKY63; WRKY66	Not Available	50.23%
Matrix_475	AT5G64220	Not Available	50.21%
Matrix_122	ABF1; AREB2	Not Available	50.20%
Matrix_478	AT1G01250	Not Available	50.19%
Matrix_239	AT5G04390	Not Available	50.18%
Matrix_357	WRKY61; WRKY6; WRKY9; WRKY36; WRKY47; WRKY42; WRKY31; WRKY72	Not Available	50.11%
Matrix_431	ATHB21; HB-3	Not Available	50.10%
Matrix_329	WRKY12	Not Available	50.09%
Matrix_449	BIM2	Not Available	50.07%
Matrix_258	WOX13	Not Available	50.04%
Matrix_162	AtPHR1	Not Available	50.00%