PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_140
Name: ATHB5
Description: DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_213	ATHB22	Not Available	66.39%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	64.47%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	64.23%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	63.66%
Motif_169	ATHB2 binding site motif	Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	62.65%
Matrix_431	ATHB21; HB-3	Not Available	61.84%
Matrix_483	ICU4	Not Available	61.52%
Matrix_441	ATHB5	Not Available	59.24%
Matrix_258	WOX13	Not Available	57.22%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	56.33%
Matrix_458	MGP; AT1G14580; AtIDD7; AtIDD5; AtIDD4; AtIDD12; JKD; AT5G66730	Not Available	56.24%
Matrix_435	ATHB51	Not Available	55.63%
Matrix_318	ATHB16	Not Available	54.35%
Matrix_497	AP3	Not Available	54.33%
Matrix_404	OBP4	Not Available	54.27%
Matrix_161	MYBC1; AT3G10760; LUX; AT5G05090; AT5G59570	Not Available	54.24%
Matrix_392	ARR2	Not Available	54.17%
Matrix_4	ARR14	Not Available	53.67%
Matrix_210	ARR1	Not Available	53.32%
Matrix_491	AT1G68670; AT3G25790	Not Available	53.28%
Matrix_361	AT1G25550	Not Available	53.23%
Motif_677	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	53.04%
Motif_298	GMHDLGMVSPB	Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein	52.91%
Matrix_97	APRR2	Not Available	52.86%
Matrix_246	ARR10	Molecular structure of the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators	52.76%
Matrix_380	ATMYR1	Not Available	52.74%
Matrix_354	AHL12	Not Available	52.69%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	52.66%
Matrix_324	AT2G01060	Not Available	52.63%
Matrix_508	APL; AT3G12730; AT3G24120; UNE16	Not Available	52.58%
Matrix_204	WOX13	Not Available	52.38%
Matrix_201	AT1G74840	Not Available	52.31%
Matrix_16	AT3G04450; PHL1	Not Available	52.01%
Motif_285	HDZIP2ATATHB2	Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene	52.01%
Matrix_495	HD-GL2-1; ANL2	Not Available	51.91%
Motif_474	ELRENTCHN50	Elicitor-responsive element (ElRE); Found in tobacco basic class I chitinase gene (CHN50)	51.84%
Motif_687	AtWER	Regulation of CAPRICE transcription by MYB proteins for root epidermis differentiation in Arabidopsis	51.82%
Motif_405	DREB2A; DREB1A	Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Interaction between two cis-acting elements, ABRE and DRE, in ABA-dependent expression of Arabidopsis rd29A gene in response to dehydration and high-salinity stresses	51.73%
Matrix_69	AT2G03500	Not Available	51.62%
Matrix_176	MYB98	Not Available	51.45%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	51.42%
Matrix_313	ATMYB65; MYB33	Not Available	51.34%
Matrix_162	AtPHR1	Not Available	51.13%
Matrix_62	HAT5	Not Available	51.02%
Matrix_502	AT3G13040	Not Available	50.82%
Matrix_13	HAT5	Not Available	50.80%
Matrix_8	KAN1	Not Available	50.72%
Motif_118	CAATBOX2	CAAT box found in the 5' upstream region (-80) of many eukaryotic genes; GGC(or T)CAATCT	50.71%
Motif_494	TOPOISOM	Topoisomerase cleavage site consensus sequence; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)	50.67%
Matrix_226	GATA1	Not Available	50.57%
Matrix_276	AT1G01520; AT3G09600; AT4G01280; LCL1; AT5G52660	Not Available	50.51%
Matrix_87	AT1G19000	Not Available	50.49%
Matrix_461	ATHB12	Not Available	50.48%
Matrix_434	ARR11	Not Available	50.21%
Matrix_349	CDC5	Not Available	50.10%
Matrix_187	CDC5	Not Available	50.10%
Matrix_430	TOE2	Not Available	50.06%
Matrix_74	LFY	Not Available	50.06%